{
    "type": "genome",
    "identifier": "GCA_002409005.1",
    "organism": "Proteiniphilum sp. UBA5242",
    "title": "Proteiniphilum sp. UBA5242",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002409005.1",
        "bioproject": "PRJNA348753",
        "biosample": "SAMN06452748",
        "wgs_master": "DHUE00000000.1",
        "refseq_category": "na",
        "taxid": "1947267",
        "species_taxid": "1947267",
        "organism_name": "Proteiniphilum sp. UBA5242",
        "infraspecific_name": "",
        "isolate": "UBA5242",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/03",
        "asm_name": "ASM240900v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/409/005/GCA_002409005.1_ASM240900v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-03",
    "dateModified": "2017-10-03",
    "datePublished": "2017-10-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Proteiniphilum sp. UBA5242"
        ],
        "sample_taxid": [
            "1947267"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Luzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.693 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2435693",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "296004",
        "N50 (bp)": "75243",
        "Gap Ratio (%)": "1.116561",
        "GCcontent (%)": "42.4",
        "Number of CDSs": "1826",
        "Average Protein Length": "368.7",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Petrimonas mucosa",
                "strain": "strain=ING2-E5A",
                "accession": "GCA_900095795.1",
                "taxid": 1642646,
                "species_taxid": 1642646,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 78,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lascolabacillus massiliensis",
                "strain": "strain=SIT8",
                "accession": "GCA_001282625.1",
                "taxid": 1627894,
                "species_taxid": 1627894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7141,
                "matched_fragments": 86,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum acetatigenes",
                "strain": "strain=DSM 18083",
                "accession": "GCA_000380985.1",
                "taxid": 294710,
                "species_taxid": 294710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3648,
                "matched_fragments": 168,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1947,
                "matched_fragments": 177,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_002410345.1",
                "gtdb_species": "s__Proteiniphilum sp002410345",
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                "matched_fragments": 703,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 18,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002410825.1",
                "gtdb_species": "s__Proteiniphilum sp002410825",
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                "matched_fragments": 139,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001768325.1",
                "gtdb_species": "s__Proteiniphilum sp001768325",
                "ani": 78.4024,
                "matched_fragments": 170,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.95",
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                "status": "-"
            },
            {
                "accession": "GCA_002408485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.43",
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                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_016916535.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000380985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
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            },
            {
                "accession": "GCA_018433945.1",
                "gtdb_species": "s__Proteiniphilum sp018433945",
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                "total_fragments": 782,
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003517675.1",
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            },
            {
                "accession": "GCA_016649795.1",
                "gtdb_species": "s__Proteiniphilum sp016649795",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
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            {
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                "gtdb_species": "s__Proteiniphilum sp015478855",
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            },
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                "accession": "GCA_002411515.1",
                "gtdb_species": "s__Proteiniphilum sp002411515",
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            {
                "accession": "GCA_002383605.1",
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                "mean_intra_species_ani": "99.07",
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            {
                "accession": "GCA_012837345.1",
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                "matched_fragments": 102,
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.171,
        "cell_length": 0.295,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.5,
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        "range_salinity": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Proteiniphilum",
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    ],
    "_genome_taxon": [
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        "sp.",
        "UBA5242",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Proteiniphilum",
        "s__Proteiniphilum propionicum",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Dysgonomonadaceae",
        "Proteiniphilum",
        "Proteiniphilum",
        "propionicum"
    ],
    "_meo": [
        {
            "id": "MEO_0000065",
            "label": "mud"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}