{ "tc_result": [ { "organism_name": "Pseudescherichia vulneris", "strain": "strain=NCTC12130", "accession": "GCA_900450975.1", "taxid": 566, "species_taxid": 566, "relation_to_type": "type", "validated": true, "ani": 82.3644, "matched_fragments": 937, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudescherichia vulneris", "strain": "strain=NBRC 102420", "accession": "GCA_000759795.1", "taxid": 566, "species_taxid": 566, "relation_to_type": "type", "validated": true, "ani": 82.3357, "matched_fragments": 928, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.9326, "matched_fragments": 914, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=NBRC 102595", "accession": "GCA_001515505.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9025, "matched_fragments": 929, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.8489, "matched_fragments": 863, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=ATCC 23216", "accession": "GCA_000735515.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8204, "matched_fragments": 932, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=FDAARGOS_1505", "accession": "GCA_020097395.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8183, "matched_fragments": 953, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 81.7882, "matched_fragments": 894, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7569, "matched_fragments": 929, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.7182, "matched_fragments": 876, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia aquatilis", "strain": "strain=6331-17", "accession": "GCA_002923025.1", "taxid": 2080838, "species_taxid": 2080838, "relation_to_type": "type", "validated": true, "ani": 81.6945, "matched_fragments": 940, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=CGMCC 1.12102", "accession": "GCA_900100995.1", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.5817, "matched_fragments": 922, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=SP1", "accession": "GCA_000300455.4", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.5799, "matched_fragments": 908, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.415, "matched_fragments": 884, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 81.3067, "matched_fragments": 809, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 81.2724, "matched_fragments": 833, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia oryzendophytica", "strain": "strain=REICA_082", "accession": "GCA_900094925.1", "taxid": 1005665, "species_taxid": 1005665, "relation_to_type": "type", "validated": true, "ani": 81.2242, "matched_fragments": 864, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=JCM 1661", "accession": "GCA_018323885.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 81.2229, "matched_fragments": 843, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. rhinoscleromatis", "strain": "strain=ATCC 13884", "accession": "GCA_000163455.1", "taxid": 39831, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 80.9806, "matched_fragments": 784, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lausannensis", "strain": "strain=LMG 23824", "accession": "GCA_000409365.1", "taxid": 413500, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 80.9695, "matched_fragments": 839, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella electrica", "strain": "strain=DSM 102253", "accession": "GCA_006711645.1", "taxid": 1259973, "species_taxid": 1259973, "relation_to_type": "type", "validated": true, "ani": 80.9691, "matched_fragments": 771, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella planticola", "strain": "strain=ATCC 33531", "accession": "GCA_000735435.1", "taxid": 575, "species_taxid": 575, "relation_to_type": "type", "validated": true, "ani": 80.9567, "matched_fragments": 775, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella africana", "strain": "strain=SB5857", "accession": "GCA_900978845.1", "taxid": 2489010, "species_taxid": 2489010, "relation_to_type": "type", "validated": true, "ani": 80.9053, "matched_fragments": 799, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella ornithinolytica", "strain": "strain=NBRC 105727", "accession": "GCA_001598295.1", "taxid": 54291, "species_taxid": 54291, "relation_to_type": "type", "validated": true, "ani": 80.8841, "matched_fragments": 782, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella africana", "strain": "strain=200023", "accession": "GCA_020526085.1", "taxid": 2489010, "species_taxid": 2489010, "relation_to_type": "type", "validated": true, "ani": 80.8684, "matched_fragments": 810, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_000690815.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.8248, "matched_fragments": 731, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia fergusonii", "strain": "strain=ATCC 35469T", "accession": "GCA_000026225.1", "taxid": 564, "species_taxid": 564, "relation_to_type": "type", "validated": true, "ani": 80.8149, "matched_fragments": 687, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_003697165.2", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.8055, "matched_fragments": 742, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_000734955.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 80.7935, "matched_fragments": 714, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Escherichia fergusonii", "strain": "strain=FDAARGOS_1499", "accession": "GCA_020097475.1", "taxid": 564, "species_taxid": 564, "relation_to_type": "type", "validated": true, "ani": 80.7691, "matched_fragments": 694, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 80.4764, "matched_fragments": 744, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 80.4713, "matched_fragments": 758, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116015.1", "gtdb_species": "s__Enterobacter_D sp900116015", "ani": 97.9669, "matched_fragments": 1392, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_001888805.2", "gtdb_species": "s__Enterobacter_D sp001888805", "ani": 84.3792, "matched_fragments": 1117, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018323985.1", "gtdb_species": "s__Enterobacter_D kobei_A", "ani": 84.2829, "matched_fragments": 1122, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_019218745.1", "gtdb_species": "s__Enterobacter_D sp019218745", "ani": 84.1983, "matched_fragments": 1088, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002918705.1", "gtdb_species": "s__Pseudescherichia sp002918705", "ani": 82.2142, "matched_fragments": 954, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pseudescherichia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007680145.1", "gtdb_species": "s__Pseudescherichia sp002298805", "ani": 82.1107, "matched_fragments": 951, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pseudescherichia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_007035645.1", "gtdb_species": "s__Enterobacter asburiae_B", "ani": 81.8152, "matched_fragments": 916, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.8818, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 70, "status": "-" }, { "accession": "GCF_000321045.1", "gtdb_species": "s__Phytobacter massiliensis", "ani": 81.4339, "matched_fragments": 923, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Phytobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015234305.1", "gtdb_species": "s__Superficieibacter sp900766525", "ani": 81.3187, "matched_fragments": 889, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Superficieibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014218705.1", "gtdb_species": "s__Kluyvera sichuanensis", "ani": 81.3117, "matched_fragments": 808, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018252635.1", "gtdb_species": "s__Citrobacter_A amalonaticus_E", "ani": 81.1836, "matched_fragments": 821, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009907385.1", "gtdb_species": "s__Atlantibacter hermannii_A", "ani": 81.0264, "matched_fragments": 822, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000026225.1", "gtdb_species": "s__Escherichia fergusonii", "ani": 80.8147, "matched_fragments": 687, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 77, "status": "-" }, { "accession": "GCF_003697165.2", "gtdb_species": "s__Escherichia coli", "ani": 80.8105, "matched_fragments": 741, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "95.57", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.72", "num_clustered_genomes": 26859, "status": "-" } ] }