{ "type": "genome", "identifier": "GCA_002415285.1", "organism": "Enterobacteriaceae bacterium UBA5030", "title": "Enterobacteriaceae bacterium UBA5030", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002415285.1", "bioproject": "PRJNA348753", "biosample": "SAMN06457500", "wgs_master": "DICI00000000.1", "refseq_category": "na", "taxid": "1951694", "species_taxid": "1951694", "organism_name": "Enterobacteriaceae bacterium UBA5030", "infraspecific_name": "", "isolate": "UBA5030", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/03", "asm_name": "ASM241528v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/415/285/GCA_002415285.1_ASM241528v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-03", "dateModified": "2017-10-03", "datePublished": "2017-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacteriaceae bacterium UBA5030" ], "sample_taxid": [ "1951694" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "1.274 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4505578", "Number of Sequences": "21", "Longest Sequences (bp)": "1413020", "N50 (bp)": "451320", "Gap Ratio (%)": "0.026967", "GCcontent (%)": "55.0", "Number of CDSs": "4175", "Average Protein Length": "321.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudescherichia vulneris", "strain": "strain=NCTC12130", "accession": "GCA_900450975.1", "taxid": 566, "species_taxid": 566, "relation_to_type": "type", "validated": true, "ani": 82.3644, "matched_fragments": 937, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudescherichia vulneris", "strain": "strain=NBRC 102420", "accession": "GCA_000759795.1", "taxid": 566, "species_taxid": 566, "relation_to_type": "type", "validated": true, "ani": 82.3357, "matched_fragments": 928, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.9326, "matched_fragments": 914, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=NBRC 102595", "accession": "GCA_001515505.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9025, "matched_fragments": 929, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.8489, "matched_fragments": 863, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=ATCC 23216", "accession": "GCA_000735515.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8204, "matched_fragments": 932, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=FDAARGOS_1505", "accession": "GCA_020097395.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8183, "matched_fragments": 953, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 81.7882, "matched_fragments": 894, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7569, "matched_fragments": 929, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.7182, "matched_fragments": 876, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia aquatilis", "strain": "strain=6331-17", "accession": "GCA_002923025.1", "taxid": 2080838, "species_taxid": 2080838, "relation_to_type": "type", "validated": true, "ani": 81.6945, "matched_fragments": 940, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=CGMCC 1.12102", "accession": "GCA_900100995.1", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.5817, "matched_fragments": 922, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia sacchari", "strain": "strain=SP1", "accession": "GCA_000300455.4", "taxid": 1158459, "species_taxid": 1158459, "relation_to_type": "type", "validated": true, "ani": 81.5799, "matched_fragments": 908, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.415, "matched_fragments": 884, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 81.3067, "matched_fragments": 809, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 81.2724, "matched_fragments": 833, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia oryzendophytica", "strain": "strain=REICA_082", "accession": "GCA_900094925.1", "taxid": 1005665, "species_taxid": 1005665, "relation_to_type": "type", "validated": true, "ani": 81.2242, "matched_fragments": 864, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=JCM 1661", "accession": 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