{ "type": "genome", "identifier": "GCA_002419045.1", "organism": "Syntrophaceae bacterium UBA5751", "title": "Syntrophaceae bacterium UBA5751", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002419045.1", "bioproject": "PRJNA348753", "biosample": "SAMN06454543", "wgs_master": "DIFJ00000000.1", "refseq_category": "na", "taxid": "1961445", "species_taxid": "1961445", "organism_name": "Syntrophaceae bacterium UBA5751", "infraspecific_name": "", "isolate": "UBA5751", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/03", "asm_name": "ASM241904v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/419/045/GCA_002419045.1_ASM241904v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-03", "dateModified": "2017-10-03", "datePublished": "2017-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Syntrophaceae bacterium UBA5751" ], "sample_taxid": [ "1961445" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Northern Alberta" ], "sample_host_location_id": [], "data_size": "0.738 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2588094", "Number of Sequences": "88", "Longest Sequences (bp)": "102340", "N50 (bp)": "44473", "Gap Ratio (%)": "0.092926", "GCcontent (%)": "53.3", "Number of CDSs": "2411", "Average Protein Length": "307.6", "Coding Ratio (%)": "86.0", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002383495.1", "gtdb_species": "s__UBA4054 sp002383495", "ani": 99.9601, "matched_fragments": 776, "total_fragments": 822, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA4778;g__UBA4054", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002418885.1", "gtdb_species": "s__UBA2207 sp002418885", "ani": 77.2901, 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"d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__PHBD01;g__PHBD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002441265.1", "gtdb_species": "s__UBA6807 sp002441265", "ani": 76.5767, "matched_fragments": 59, "total_fragments": 822, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA6807;g__UBA6807", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003141195.1", "gtdb_species": "s__UBA5619 sp003141195", "ani": 76.0504, "matched_fragments": 52, "total_fragments": 822, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903928915.1", "gtdb_species": "s__UBA5619 sp903928915", "ani": 75.9327, "matched_fragments": 55, "total_fragments": 822, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.094, "cell_length": 0.377, "doubling_h": 1.431, "growth_tmp": 35.0, "optimum_tmp": 34.722, "optimum_ph": 7.149, "genome_size": 4176389.15, "gc_content": 50.41, "coding_genes": 3784.666, "rRNA16S_genes": 1.0, "tRNA_genes": 48.333, "gram_stain": 0.0, "sporulation": 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