{ "type": "genome", "identifier": "GCA_002419085.1", "organism": "Desulfobulbaceae bacterium UBA5750", "title": "Desulfobulbaceae bacterium UBA5750", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002419085.1", "bioproject": "PRJNA348753", "biosample": "SAMN06454542", "wgs_master": "DIFK00000000.1", "refseq_category": "na", "taxid": "1961557", "species_taxid": "1961557", "organism_name": "Desulfobulbaceae bacterium UBA5750", "infraspecific_name": "", "isolate": "UBA5750", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/03", "asm_name": "ASM241908v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/419/085/GCA_002419085.1_ASM241908v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-03", "dateModified": "2017-10-03", "datePublished": "2017-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbaceae bacterium UBA5750" ], "sample_taxid": [ "1961557" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Northern Alberta" ], "sample_host_location_id": [], "data_size": "0.889 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3163913", "Number of Sequences": "212", "Longest Sequences (bp)": "143100", "N50 (bp)": "21281", "Gap Ratio (%)": "0.538289", "GCcontent (%)": "59.7", "Number of CDSs": "2714", "Average Protein Length": "308.2", "Coding Ratio (%)": "79.3", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_014201505.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 88.4087, "matched_fragments": 752, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_016918515.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 88.336, "matched_fragments": 753, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus elongatus", "strain": "strain=DSM 2908", "accession": "GCA_000621145.1", "taxid": 53332, "species_taxid": 53332, "relation_to_type": "type", "validated": true, "ani": 77.5096, "matched_fragments": 172, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfofustis glycolicus", "strain": "strain=DSM 9705", "accession": "GCA_900130015.1", "taxid": 51195, "species_taxid": 51195, "relation_to_type": "type", "validated": true, "ani": 77.0338, "matched_fragments": 164, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfopila aestuarii", "strain": "strain=DSM 18488", "accession": "GCA_900143695.1", "taxid": 231440, "species_taxid": 231440, "relation_to_type": "type", "validated": true, "ani": 76.585, "matched_fragments": 101, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum mediterraneum", "strain": "strain=DSM 13871", "accession": "GCA_000429965.1", "taxid": 160661, "species_taxid": 160661, "relation_to_type": "type", "validated": true, "ani": 76.5156, "matched_fragments": 95, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosediminicola ganghwensis", "strain": "strain=IMCC35004", "accession": "GCA_005116675.2", "taxid": 2569540, "species_taxid": 2569540, "relation_to_type": "type", "validated": true, "ani": 76.3026, "matched_fragments": 52, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulforhopalus singaporensis", "strain": "strain=DSM 12130", "accession": "GCA_900104445.1", "taxid": 91360, "species_taxid": 91360, "relation_to_type": "type", "validated": true, "ani": 76.0565, "matched_fragments": 76, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, "ani": 75.8388, "matched_fragments": 54, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000769715.1", "gtdb_species": "s__Desulfoprunum sp000769715", "ani": 99.782, "matched_fragments": 890, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfoprunum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_014201505.1", "gtdb_species": "s__Desulfoprunum benzoelyticum", "ani": 88.4087, "matched_fragments": 752, "total_fragments": 951, "gtdb_taxonomy": 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"Desulfobulbales", "Desulfocapsaceae", "Desulfoprunum", "Desulfoprunum", "sp000769715" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }