{ "type": "genome", "identifier": "GCA_002425015.1", "organism": "Chitinophagaceae bacterium UBA5593", "title": "Chitinophagaceae bacterium UBA5593", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002425015.1", "bioproject": "PRJNA348753", "biosample": "SAMN06455929", "wgs_master": "DILL00000000.1", "refseq_category": "na", "taxid": "1951563", "species_taxid": "1951563", "organism_name": "Chitinophagaceae bacterium UBA5593", "infraspecific_name": "", "isolate": "UBA5593", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/04", "asm_name": "ASM242501v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/425/015/GCA_002425015.1_ASM242501v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-04", "dateModified": "2017-10-04", "datePublished": "2017-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophagaceae bacterium UBA5593" ], "sample_taxid": [ "1951563" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Brisbane, Thorneside Wastewater Treatment Plant" ], "sample_host_location_id": [], "data_size": "0.737 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2611121", "Number of Sequences": "168", "Longest Sequences (bp)": "68608", "N50 (bp)": "22907", "Gap Ratio (%)": "1.484037", "GCcontent (%)": "47.5", "Number of CDSs": "2086", "Average Protein Length": "344.0", "Coding Ratio (%)": "82.4", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminibacterium soli", "strain": "strain=WSJ-3", "accession": "GCA_009939225.1", "taxid": 2698829, "species_taxid": 2698829, "relation_to_type": "type", "validated": true, "ani": 75.7323, "matched_fragments": 57, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 75.6299, "matched_fragments": 55, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { 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