{ "tc_result": [ { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_018987305.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 98.5184, "matched_fragments": 1355, "total_fragments": 1478, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_017348915.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 98.5143, "matched_fragments": 1357, "total_fragments": 1478, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter cancerogenus", "strain": "strain=FDAARGOS 1428", "accession": "GCA_019047785.1", "taxid": 69218, "species_taxid": 69218, "relation_to_type": "type", "validated": true, "ani": 84.7766, "matched_fragments": 1055, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cancerogenus", "strain": "", "accession": "GCA_900185905.1", "taxid": 69218, "species_taxid": 69218, "relation_to_type": "type", "validated": true, "ani": 84.5988, "matched_fragments": 1058, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 84.2541, "matched_fragments": 1082, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 84.2393, "matched_fragments": 999, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=FDAARGOS_1505", "accession": "GCA_020097395.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2257, "matched_fragments": 1139, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=ATCC 23216", "accession": "GCA_000735515.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2122, "matched_fragments": 1122, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia adecarboxylata", "strain": "strain=NBRC 102595", "accession": "GCA_001515505.1", "taxid": 83655, "species_taxid": 83655, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2, "matched_fragments": 1124, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 84.0804, "matched_fragments": 1042, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "", "accession": "GCA_900324475.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 84.0389, "matched_fragments": 1076, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter bugandensis", "strain": "strain=FDAARGOS 1427", "accession": "GCA_019046905.1", "taxid": 881260, "species_taxid": 881260, "relation_to_type": "type", "validated": true, "ani": 83.9952, "matched_fragments": 1059, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hoffmannii", "strain": "strain=DSM 14563", "accession": "GCA_001729745.1", "taxid": 1812934, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.9329, "matched_fragments": 1031, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.9136, "matched_fragments": 1049, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.857, "matched_fragments": 1047, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017348915.1", "gtdb_species": "s__UBA7405 sp000755535", "ani": 98.5143, "matched_fragments": 1357, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__UBA7405", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_002469605.1", "gtdb_species": "s__UBA7405 sp002469605", "ani": 85.4889, "matched_fragments": 812, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__UBA7405", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019047785.1", "gtdb_species": "s__Enterobacter cancerogenus", "ani": 84.7558, "matched_fragments": 1058, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_006171285.1", "gtdb_species": "s__Leclercia adecarboxylata_A", "ani": 84.4674, "matched_fragments": 1124, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006874705.1", "gtdb_species": "s__Leclercia adecarboxylata_C", "ani": 84.4584, "matched_fragments": 1132, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_002360945.1", "gtdb_species": "s__Leclercia adecarboxylata_B", "ani": 84.44, "matched_fragments": 1124, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011290365.1", "gtdb_species": "s__Leclercia sp003024485", "ani": 84.4247, "matched_fragments": 1114, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004331265.1", "gtdb_species": "s__Enterobacter wuhouensis", "ani": 84.2632, "matched_fragments": 1081, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003594935.1", "gtdb_species": "s__Enterobacter huaxiensis", "ani": 84.254, "matched_fragments": 1070, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008364625.1", "gtdb_species": "s__Enterobacter dykesii", "ani": 84.2249, "matched_fragments": 1025, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.5795, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_901472455.1", "gtdb_species": "s__Leclercia adecarboxylata", "ani": 84.0976, "matched_fragments": 1135, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 86, "status": "-" }, { "accession": "GCF_007035645.1", "gtdb_species": "s__Enterobacter asburiae_B", "ani": 84.0839, "matched_fragments": 1045, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.8818, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 70, "status": "-" }, { "accession": "GCF_009176645.1", "gtdb_species": "s__Enterobacter oligotrophicus", "ani": 84.0699, "matched_fragments": 1043, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009755685.1", "gtdb_species": "s__Enterobacter sp000568095", "ani": 84.062, "matched_fragments": 1038, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0476, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_003594915.1", "gtdb_species": "s__Enterobacter chuandaensis", "ani": 84.0468, "matched_fragments": 1043, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000211415.1", "gtdb_species": "s__Enterobacter mori", "ani": 84.0383, "matched_fragments": 1051, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_011754535.1", "gtdb_species": "s__Enterobacter cloacae_N", "ani": 83.9948, "matched_fragments": 1034, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001729745.1", "gtdb_species": "s__Enterobacter hormaechei_A", "ani": 83.9353, "matched_fragments": 1031, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 1867, "status": "-" }, { "accession": "GCF_003057745.1", "gtdb_species": "s__Enterobacter sp003057745", "ani": 83.8341, "matched_fragments": 993, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018257515.1", "gtdb_species": "s__Tatumella sp018257515", "ani": 77.9733, "matched_fragments": 196, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Tatumella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015548865.1", "gtdb_species": "s__Symbiopectobacterium marcescens_A", "ani": 77.8907, "matched_fragments": 237, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Symbiopectobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }