{ "type": "genome", "identifier": "GCA_002430835.1", "organism": "Brevundimonas sp. UBA5936", "title": "Brevundimonas sp. UBA5936", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002430835.1", "bioproject": "PRJNA348753", "biosample": "SAMN06451248", "wgs_master": "DJDA00000000.1", "refseq_category": "na", "taxid": "1946133", "species_taxid": "1946133", "organism_name": "Brevundimonas sp. UBA5936", "infraspecific_name": "", "isolate": "UBA5936", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/04", "asm_name": "ASM243083v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/430/835/GCA_002430835.1_ASM243083v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-04", "dateModified": "2017-10-04", "datePublished": "2017-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas sp. UBA5936" ], "sample_taxid": [ "1946133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "0.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3098378", "Number of Sequences": "154", "Longest Sequences (bp)": "117671", "N50 (bp)": "29639", "Gap Ratio (%)": "0.113479", "GCcontent (%)": "67.4", "Number of CDSs": "2915", "Average Protein Length": "303.3", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas diminuta", "strain": "strain=NCTC8545", 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"species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 89.7267, "matched_fragments": 679, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pondensis", "strain": "strain=LVF1", "accession": "GCA_017487345.1", "taxid": 2774189, "species_taxid": 2774189, "relation_to_type": "type", "validated": true, "ani": 86.7638, "matched_fragments": 681, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 82.9647, "matched_fragments": 597, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", 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"matched_fragments": 389, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.98, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002430835.1", "gtdb_species": "s__Brevundimonas sp002430835", "ani": 100.0, "matched_fragments": 948, "total_fragments": 958, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003938605.1", "gtdb_species": "s__Brevundimonas sp003938605", "ani": 94.3785, "matched_fragments": 732, "total_fragments": 958, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", 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"label": "human activity associated" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }