{ "type": "genome", "identifier": "GCA_002430845.1", "organism": "Enterobacteriaceae bacterium UBA5935", "title": "Enterobacteriaceae bacterium UBA5935", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002430845.1", "bioproject": "PRJNA348753", "biosample": "SAMN06451251", "wgs_master": "DJDB00000000.1", "refseq_category": "na", "taxid": "1951704", "species_taxid": "1951704", "organism_name": "Enterobacteriaceae bacterium UBA5935", "infraspecific_name": "", "isolate": "UBA5935", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/04", "asm_name": "ASM243084v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/430/845/GCA_002430845.1_ASM243084v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-04", "dateModified": "2017-10-04", "datePublished": "2017-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacteriaceae bacterium UBA5935" ], "sample_taxid": [ "1951704" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "1.587 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5580426", "Number of Sequences": "38", "Longest Sequences (bp)": "490528", "N50 (bp)": "191113", "Gap Ratio (%)": "0.003369", "GCcontent (%)": "53.5", "Number of CDSs": "5124", "Average Protein Length": "319.6", "Coding Ratio (%)": "88.0", "Number of rRNAs": "5", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella huaxiensis", "strain": "strain=WCHKl090001", "accession": "GCA_003261575.2", "taxid": 2153354, "species_taxid": 2153354, "relation_to_type": "type", "validated": true, "ani": 99.9416, "matched_fragments": 1802, "total_fragments": 1841, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella spallanzanii", "strain": "", "accession": "GCA_902158555.1", "taxid": 2587528, "species_taxid": 2587528, "relation_to_type": "type", "validated": true, "ani": 92.0587, "matched_fragments": 1599, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella grimontii", "strain": "strain=06D021", "accession": "GCA_900200035.1", "taxid": 2058152, "species_taxid": 2058152, "relation_to_type": "type", "validated": true, "ani": 88.3625, "matched_fragments": 1432, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=CCUG 66515", "accession": "GCA_009173485.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 88.2354, "matched_fragments": 1431, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=DSM 25444", "accession": "GCA_002925905.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 88.2328, "matched_fragments": 1428, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 88.0881, "matched_fragments": 1444, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NCTC13727", "accession": "GCA_900636985.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 87.7607, "matched_fragments": 1446, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=DSM 5175", "accession": "GCA_020115535.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 87.6983, "matched_fragments": 1446, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 87.6673, "matched_fragments": 1460, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 83.3816, "matched_fragments": 1147, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.1544, "matched_fragments": 848, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.1193, "matched_fragments": 846, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0646, "matched_fragments": 807, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 80.9265, "matched_fragments": 823, "total_fragments": 1841, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003261575.2", "gtdb_species": 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