{ "type": "genome", "identifier": "GCA_002430855.1", "organism": "Acinetobacter sp. UBA5934", "title": "Acinetobacter sp. UBA5934", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002430855.1", "bioproject": "PRJNA348753", "biosample": "SAMN06451250", "wgs_master": "DJDC00000000.1", "refseq_category": "na", "taxid": "1945946", "species_taxid": "1945946", "organism_name": "Acinetobacter sp. UBA5934", "infraspecific_name": "", "isolate": "UBA5934", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/04", "asm_name": "ASM243085v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/430/855/GCA_002430855.1_ASM243085v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-04", "dateModified": "2017-10-04", "datePublished": "2017-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter sp. UBA5934" ], "sample_taxid": [ "1945946" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:New York City" ], "sample_host_location_id": [], "data_size": "0.869 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3057716", "Number of Sequences": "202", "Longest Sequences (bp)": "116434", "N50 (bp)": "22611", "Gap Ratio (%)": "0.714651", "GCcontent (%)": "41.6", "Number of CDSs": "2750", "Average Protein Length": "293.0", "Coding Ratio (%)": "79.0", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 84.4379, "matched_fragments": 714, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrestris", "strain": "strain=ANC 4471", "accession": "GCA_004331155.1", "taxid": 2529843, "species_taxid": 2529843, "relation_to_type": "suspected-type", "validated": true, "ani": 84.3911, "matched_fragments": 705, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 82.3128, "matched_fragments": 633, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 81.1498, "matched_fragments": 498, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter albensis", "strain": "strain=ANC 4874", "accession": "GCA_900095025.1", "taxid": 1673609, "species_taxid": 1673609, "relation_to_type": "type", "validated": true, "ani": 80.6477, "matched_fragments": 519, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.6177, "matched_fragments": 468, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.575, "matched_fragments": 463, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 80.5571, "matched_fragments": 469, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.4739, "matched_fragments": 470, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.3236, "matched_fragments": 494, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.3002, "matched_fragments": 479, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1855, "matched_fragments": 471, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lanii", "strain": "strain=185", "accession": "GCA_011578285.1", "taxid": 2715163, "species_taxid": 2715163, "relation_to_type": "type", "validated": true, "ani": 79.6827, "matched_fragments": 418, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.5711, "matched_fragments": 380, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 79.1604, "matched_fragments": 365, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.6152, "matched_fragments": 316, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.5208, "matched_fragments": 259, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.19, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002365595.1", "gtdb_species": "s__Acinetobacter sp002365595", "ani": 98.1225, "matched_fragments": 821, "total_fragments": 920, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002455755.1", 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"total_fragments": 920, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.13", "min_intra_species_ani": "95.48", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3546146.356, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.034, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.652, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.347, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Acinetobacter", "s__Acinetobacter sp002365595" ], "_genome_taxon": [ "Acinetobacter", "sp.", "UBA5934", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Moraxellaceae", "g__Acinetobacter", "s__Acinetobacter sp002365595", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Moraxellaceae", "Acinetobacter", "Acinetobacter", "sp002365595" ], "_meo": [ { "id": "MEO_0000837", "label": "human activity associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }