{ "type": "genome", "identifier": "GCA_002490355.1", "organism": "Lactococcus sp. UBA7220", "title": "Lactococcus sp. UBA7220", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002490355.1", "bioproject": "PRJNA348753", "biosample": "SAMN06456511", "wgs_master": "DKTW00000000.1", "refseq_category": "na", "taxid": "1946735", "species_taxid": "1946735", "organism_name": "Lactococcus sp. UBA7220", "infraspecific_name": "", "isolate": "UBA7220", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/10", "asm_name": "ASM249035v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/490/355/GCA_002490355.1_ASM249035v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-10", "dateModified": "2017-10-10", "datePublished": "2017-10-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactococcus sp. UBA7220" ], "sample_taxid": [ "1946735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NULL" ], "sample_host_location_id": [], "data_size": "0.614 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2164799", "Number of Sequences": "155", "Longest Sequences (bp)": "47262", "N50 (bp)": "19711", "Gap Ratio (%)": "1.089016", "GCcontent (%)": "39.2", "Number of CDSs": "1949", "Average Protein Length": "303.0", "Coding Ratio (%)": "81.8", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactococcus formosensis", "strain": "strain=NBRC 109475", "accession": 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1890280, "species_taxid": 1363, "relation_to_type": "type", "validated": true, "ani": 83.4921, "matched_fragments": 365, "total_fragments": 642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus garvieae", "strain": "strain=DSM 20684", "accession": "GCA_002441675.1", "taxid": 1363, "species_taxid": 1363, "relation_to_type": "type", "validated": true, "ani": 83.4876, "matched_fragments": 360, "total_fragments": 642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus garvieae", "strain": "strain=NBRC 100934", "accession": "GCA_000739975.1", "taxid": 1363, "species_taxid": 1363, "relation_to_type": "type", "validated": true, "ani": 83.4377, "matched_fragments": 356, "total_fragments": 642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus garvieae", "strain": "strain=FDAARGOS_929", "accession": "GCA_016026695.1", "taxid": 1363, "species_taxid": 1363, "relation_to_type": "type", 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016758115.1", "gtdb_species": "s__Lactococcus sp002492185", "ani": 98.6694, "matched_fragments": 563, "total_fragments": 642, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_018403745.1", "gtdb_species": "s__Lactococcus formosensis", "ani": 83.9547, "matched_fragments": 367, "total_fragments": 642, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "97.52", 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"Lactobacillales", "Streptococcaceae", "Lactococcus", "Lactococcus", "muris" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }