{
    "type": "genome",
    "identifier": "GCA_002492415.1",
    "organism": "Christensenella sp. UBA7102",
    "title": "Christensenella sp. UBA7102",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002492415.1",
        "bioproject": "PRJNA348753",
        "biosample": "SAMN06457491",
        "wgs_master": "DKYK00000000.1",
        "refseq_category": "na",
        "taxid": "1946292",
        "species_taxid": "1946292",
        "organism_name": "Christensenella sp. UBA7102",
        "infraspecific_name": "",
        "isolate": "UBA7102",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/10",
        "asm_name": "ASM249241v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/492/415/GCA_002492415.1_ASM249241v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-10",
    "dateModified": "2017-10-10",
    "datePublished": "2017-10-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Christensenella sp. UBA7102"
        ],
        "sample_taxid": [
            "1946292"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NULL"
        ],
        "sample_host_location_id": [],
        "data_size": "0.710 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.8,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2529690",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "141772",
        "N50 (bp)": "39432",
        "Gap Ratio (%)": "1.059735",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "2368",
        "Average Protein Length": "301.7",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 83.8,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002492415.1",
                "gtdb_species": "s__Spyradocola sp002492415",
                "ani": 99.9999,
                "matched_fragments": 790,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_904393115.1",
                "gtdb_species": "s__Spyradocola merdavium",
                "ani": 80.1258,
                "matched_fragments": 407,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_905193155.1",
                "gtdb_species": "s__Spyradocola sp905193155",
                "ani": 79.6441,
                "matched_fragments": 362,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002315655.1",
                "gtdb_species": "s__Spyradocola sp002315655",
                "ani": 77.9753,
                "matched_fragments": 200,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017936765.1",
                "gtdb_species": "s__UBA11524 sp017936765",
                "ani": 77.0352,
                "matched_fragments": 52,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA11524",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018713325.1",
                "gtdb_species": "s__Onthenecus intestinigallinarum",
                "ani": 76.9669,
                "matched_fragments": 94,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Onthenecus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900553265.1",
                "gtdb_species": "s__Faecivicinus sp900553265",
                "ani": 76.9202,
                "matched_fragments": 86,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Faecivicinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004557125.1",
                "gtdb_species": "s__SFTH01 sp004557125",
                "ani": 76.8771,
                "matched_fragments": 99,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__SFTH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017399225.1",
                "gtdb_species": "s__UBA11524 sp017399225",
                "ani": 76.6599,
                "matched_fragments": 59,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA11524",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004555535.1",
                "gtdb_species": "s__Ventricola sp004555535",
                "ani": 76.544,
                "matched_fragments": 71,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900540045.1",
                "gtdb_species": "s__Limiplasma merdipullorum",
                "ani": 76.4005,
                "matched_fragments": 74,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Limiplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902790345.1",
                "gtdb_species": "s__Firm-10 sp902790345",
                "ani": 76.2858,
                "matched_fragments": 86,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Firm-10",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": 2745730.0,
        "gc_content": 50.4,
        "coding_genes": 2428.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.0,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__UBA1750",
        "g__Spyradocola",
        "s__Spyradocola sp002492415"
    ],
    "_genome_taxon": [
        "Christensenella",
        "sp.",
        "UBA7102",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__UBA1750",
        "g__Spyradocola",
        "s__Spyradocola sp002492415",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Christensenellales",
        "UBA1750",
        "Spyradocola",
        "Spyradocola",
        "sp002492415"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}