{ "type": "genome", "identifier": "GCA_002683455.1", "organism": "Alteromonadaceae bacterium", "title": "Alteromonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002683455.1", "bioproject": "PRJNA391943", "biosample": "SAMN07618326", "wgs_master": "NYTK00000000.1", "refseq_category": "na", "taxid": "1916082", "species_taxid": "1916082", "organism_name": "Alteromonadaceae bacterium", "infraspecific_name": "", "isolate": "CPC69", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/24", "asm_name": "ASM268345v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/683/455/GCA_002683455.1_ASM268345v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-24", "dateModified": "2017-10-24", "datePublished": "2017-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonadaceae bacterium" ], "sample_taxid": [ "1916082" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4462782", "Number of Sequences": "94", "Longest Sequences (bp)": "237464", "N50 (bp)": "83599", "Gap Ratio (%)": "0.008224", "GCcontent (%)": "55.4", "Number of CDSs": "4066", "Average Protein Length": "319.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter algicola", "strain": "strain=DG893", "accession": "GCA_000170835.1", "taxid": 236100, "species_taxid": 236100, "relation_to_type": "type", "validated": true, "ani": 78.4333, "matched_fragments": 255, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 78.4092, "matched_fragments": 226, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 78.3886, "matched_fragments": 440, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 78.3027, "matched_fragments": 418, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.2943, "matched_fragments": 199, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nanhaiticus", "strain": "strain=D15-8W", "accession": "GCA_000364845.1", 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77.7833, "matched_fragments": 239, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 77.7541, "matched_fragments": 234, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 77.7128, "matched_fragments": 212, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhejiangensis", "strain": "strain=CGMCC 1.7061", "accession": "GCA_900114775.1", "taxid": 488535, "species_taxid": 488535, "relation_to_type": "type", "validated": true, "ani": 77.6756, "matched_fragments": 208, 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"below_threshold" }, { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, "relation_to_type": "type", "validated": true, "ani": 77.5492, "matched_fragments": 205, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 77.544, "matched_fragments": 230, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_003344045.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, "ani": 77.4943, "matched_fragments": 223, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 77.437, "matched_fragments": 227, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pohangensis", "strain": "strain=DSM 17875", "accession": "GCA_900105995.1", "taxid": 364197, "species_taxid": 364197, "relation_to_type": "type", "validated": true, "ani": 76.2546, "matched_fragments": 50, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, "ani": 75.6502, "matched_fragments": 52, "total_fragments": 1439, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 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