{ "type": "genome", "identifier": "GCA_002697115.1", "organism": "Planctomycetaceae bacterium", "title": "Planctomycetaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002697115.1", "bioproject": "PRJNA391943", "biosample": "SAMN07619699", "wgs_master": "NZTU00000000.1", "refseq_category": "na", "taxid": "2026779", "species_taxid": "2026779", "organism_name": "Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "EAC104", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/24", "asm_name": "ASM269711v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/697/115/GCA_002697115.1_ASM269711v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-24", "dateModified": "2017-10-24", "datePublished": "2017-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetaceae bacterium" ], "sample_taxid": [ "2026779" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 9.09, "strain_heterogeneity": 8.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2050402", "Number of Sequences": "177", "Longest Sequences (bp)": "29574", "N50 (bp)": "11787", "Gap Ratio (%)": "0.339592", "GCcontent (%)": "47.6", "Number of CDSs": "1430", "Average Protein Length": "369.7", "Coding Ratio (%)": "77.4", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 58.33, "contamination": 9.09, "strain_heterogeneity": 8.33 }, "gtdb_result": [ { "accession": "GCA_002705165.1", "gtdb_species": "s__UBA721 sp002705165", "ani": 97.8998, "matched_fragments": 376, "total_fragments": 587, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA721", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.67", "min_intra_species_af": "0.67", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002698965.1", "gtdb_species": "s__UBA721 sp002698965", "ani": 88.4558, 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"d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__UBA721", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.57", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.007, "cell_length": 0.054, "doubling_h": 1.056, "growth_tmp": 27.45, "optimum_tmp": 27.449, "optimum_ph": 6.766, "genome_size": 6959115.728, "gc_content": 55.598, "coding_genes": 5253.416, "rRNA16S_genes": 1.571, "tRNA_genes": 54.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.083, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.916, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.666, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, 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