{
    "type": "genome",
    "identifier": "GCA_002708035.1",
    "organism": "Sphingobium sp.",
    "title": "Sphingobium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Tara Oceans Consortium",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_002708035.1",
        "bioproject": "PRJNA391943",
        "biosample": "SAMN07620105",
        "wgs_master": "PAOM00000000.1",
        "refseq_category": "na",
        "taxid": "1912891",
        "species_taxid": "1912891",
        "organism_name": "Sphingobium sp.",
        "infraspecific_name": "",
        "isolate": "SAT216",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/10/25",
        "asm_name": "ASM270803v1",
        "submitter": "Tara Oceans Consortium",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/708/035/GCA_002708035.1_ASM270803v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-10-25",
    "dateModified": "2017-10-25",
    "datePublished": "2017-10-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobium sp."
        ],
        "sample_taxid": [
            "1912891"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.634 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 84.38,
        "contamination": 2.78,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2250214",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "147480",
        "N50 (bp)": "78449",
        "Gap Ratio (%)": "0.262331",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "2137",
        "Average Protein Length": "317.6",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sphingobium abikonense",
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                "accession": "GCA_001598335.1",
                "taxid": 86193,
                "species_taxid": 86193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3791,
                "matched_fragments": 606,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium lactosutens",
                "strain": "strain=DS20",
                "accession": "GCA_000445105.1",
                "taxid": 522773,
                "species_taxid": 522773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3513,
                "matched_fragments": 624,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium cupriresistens",
                "strain": "strain=CCTCC AB 2011146",
                "accession": "GCA_004152865.1",
                "taxid": 1132417,
                "species_taxid": 1132417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5902,
                "matched_fragments": 482,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium limneticum",
                "strain": "strain=DSM 25076",
                "accession": "GCA_008710155.1",
                "taxid": 1007511,
                "species_taxid": 1007511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5004,
                "matched_fragments": 509,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium yanoikuyae",
                "strain": "strain=ATCC 51230",
                "accession": "GCA_000315525.1",
                "taxid": 13690,
                "species_taxid": 13690,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.4765,
                "matched_fragments": 499,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium terrigena",
                "strain": "strain=EO9",
                "accession": "GCA_003591655.1",
                "taxid": 2304063,
                "species_taxid": 2304063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.832,
                "matched_fragments": 453,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
                "strain": "strain=NBRC 16172",
                "accession": "GCA_000722875.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.263,
                "matched_fragments": 409,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
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                "accession": "GCA_001598515.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2524,
                "matched_fragments": 382,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7984,
                "matched_fragments": 223,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
                "taxid": 2320861,
                "species_taxid": 2320861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6717,
                "matched_fragments": 192,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas morindae",
                "strain": "strain=NBD5",
                "accession": "GCA_023822065.1",
                "taxid": 1541170,
                "species_taxid": 1541170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3898,
                "matched_fragments": 207,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aracearum",
                "strain": "strain=WZY 27",
                "accession": "GCA_003345355.1",
                "taxid": 2283317,
                "species_taxid": 2283317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3311,
                "matched_fragments": 186,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 84.38,
            "contamination": 2.78,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000153545.1",
                "gtdb_species": "s__Sphingobium sp000153545",
                "ani": 98.0035,
                "matched_fragments": 668,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.49",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
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                "matched_fragments": 607,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.3976,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000445105.1",
                "gtdb_species": "s__Sphingobium lactosutens",
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                "matched_fragments": 622,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.3976,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002457415.1",
                "gtdb_species": "s__Sphingobium sp002457415",
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                "matched_fragments": 526,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001650725.1",
                "gtdb_species": "s__Sphingobium sp001650725",
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                "matched_fragments": 513,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
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                "mean_intra_species_ani": "99.12",
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            {
                "accession": "GCF_009720145.1",
                "gtdb_species": "s__Sphingobium sp009720145",
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                "matched_fragments": 485,
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_008710155.1",
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                "mean_intra_species_ani": "98.69",
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_001556865.1",
                "gtdb_species": "s__Sphingobium sp001556865",
                "ani": 81.9868,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.278,
        "cell_length": 0.094,
        "doubling_h": null,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__Sphingomonadaceae",
        "g__Sphingobium",
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    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingobium",
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        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Sphingomonadales",
        "Sphingomonadaceae",
        "Sphingobium",
        "Sphingobium",
        "soli"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}