{ "type": "genome", "identifier": "GCA_002708115.1", "organism": "Pelagibacterales bacterium", "title": "Pelagibacterales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002708115.1", "bioproject": "PRJNA391943", "biosample": "SAMN07619654", "wgs_master": "PAOT00000000.1", "refseq_category": "na", "taxid": "2026776", "species_taxid": "2026776", "organism_name": "Pelagibacterales bacterium", "infraspecific_name": "", "isolate": "SAT209", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/25", "asm_name": "ASM270811v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/708/115/GCA_002708115.1_ASM270811v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-25", "dateModified": "2017-10-25", "datePublished": "2017-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Pelagibacterales bacterium" ], "sample_taxid": [ "2026776" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "0.195 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "678252", "Number of Sequences": "26", "Longest Sequences (bp)": "53066", 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__TMED109;f__TMED109;g__GCA-002727615", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.921, "cell_length": null, "doubling_h": 1.539, "growth_tmp": 17.5, "optimum_tmp": 37.0, "optimum_ph": 7.8, "genome_size": 1303608.321, "gc_content": 29.826, "coding_genes": 1360.749, "rRNA16S_genes": 1.0, "tRNA_genes": 33.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.333, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__TMED109", "f__TMED109", "g__TMED109", "s__TMED109 sp002720535" ], "_genome_taxon": [ "Pelagibacterales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__TMED109", "f__TMED109", "g__TMED109", "s__TMED109 sp002720535", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "TMED109", "TMED109", "TMED109", "TMED109", "sp002720535" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }