{ "type": "genome", "identifier": "GCA_002708795.1", "organism": "Paracoccus sp. (in: a-proteobacteria)", "title": "Paracoccus sp. (in: a-proteobacteria)", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002708795.1", "bioproject": "PRJNA391943", "biosample": "SAMN07619595", "wgs_master": "PAPG00000000.1", "refseq_category": "na", "taxid": "267", "species_taxid": "267", "organism_name": "Paracoccus sp. (in: a-proteobacteria)", "infraspecific_name": "", "isolate": "SP169", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/25", "asm_name": "ASM270879v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/708/795/GCA_002708795.1_ASM270879v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-25", "dateModified": "2017-10-25", "datePublished": "2017-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus sp. (in: a-proteobacteria)" ], "sample_taxid": [ "267" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "0.898 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3284009", "Number of Sequences": "50", "Longest Sequences (bp)": "214727", "N50 (bp)": "92554", "Gap Ratio (%)": "0.012515", "GCcontent (%)": "65.9", "Number of CDSs": "3140", "Average Protein Length": "314.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus siganidrum", "strain": 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"type", "validated": true, "ani": 81.4826, "matched_fragments": 605, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus alcaliphilus", "strain": "strain=DSM 8512", "accession": "GCA_900110285.1", "taxid": 34002, "species_taxid": 34002, "relation_to_type": "type", "validated": true, "ani": 81.4143, "matched_fragments": 590, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus homiensis", "strain": "strain=DSM 17862", "accession": "GCA_900111675.1", "taxid": 364199, "species_taxid": 364199, "relation_to_type": "type", "validated": true, "ani": 81.3979, "matched_fragments": 635, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lichenicola", "strain": "strain=YIM 132242", "accession": "GCA_009708075.1", "taxid": 2665644, "species_taxid": 2665644, "relation_to_type": "type", "validated": true, "ani": 81.3456, "matched_fragments": 629, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 81.275, "matched_fragments": 605, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_014656455.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 81.1976, "matched_fragments": 619, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 81.0833, "matched_fragments": 609, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 80.9961, "matched_fragments": 617, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=CMB17", "accession": "GCA_004310385.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 80.9308, "matched_fragments": 608, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 80.7572, "matched_fragments": 573, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { 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