{ "type": "genome", "identifier": "GCA_002708825.1", "organism": "Phyllobacteriaceae bacterium", "title": "Phyllobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002708825.1", "bioproject": "PRJNA391943", "biosample": "SAMN07619687", "wgs_master": "PAPF00000000.1", "refseq_category": "na", "taxid": "1871068", "species_taxid": "1871068", "organism_name": "Phyllobacteriaceae bacterium", "infraspecific_name": "", "isolate": "SP17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/25", "asm_name": "ASM270882v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/708/825/GCA_002708825.1_ASM270882v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-25", "dateModified": "2017-10-25", "datePublished": "2017-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Phyllobacteriaceae bacterium" ], "sample_taxid": [ "1871068" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.299 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4696839", "Number of Sequences": "44", "Longest Sequences (bp)": "446470", "N50 (bp)": "181486", "Gap Ratio (%)": "0.004301", "GCcontent (%)": "64.1", "Number of CDSs": "4479", "Average Protein Length": "313.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zhengella mangrovi", "strain": "strain=X9-2-2", "accession": "GCA_002727065.1", "taxid": 1982044, "species_taxid": 1982044, "relation_to_type": "type", "validated": true, "ani": 83.1029, "matched_fragments": 979, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 79.5514, "matched_fragments": 570, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sediminum", "strain": "strain=KCTC 42205", "accession": "GCA_013240295.1", "taxid": 1849104, "species_taxid": 1849104, "relation_to_type": "type", "validated": true, "ani": 79.0663, "matched_fragments": 500, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor pacificus", "strain": "strain=pht-3B", "accession": "GCA_000300335.1", "taxid": 1231180, "species_taxid": 1231180, "relation_to_type": "type", "validated": true, "ani": 79.0461, "matched_fragments": 487, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.0153, "matched_fragments": 577, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 78.8765, "matched_fragments": 503, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 78.8589, "matched_fragments": 486, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor soli", "strain": "strain=ZZ-1", "accession": "GCA_001050155.1", "taxid": 1670619, "species_taxid": 1670619, "relation_to_type": "type", "validated": true, "ani": 78.7811, "matched_fragments": 491, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 78.6842, "matched_fragments": 427, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.6556, "matched_fragments": 443, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium oceanicum", "strain": "strain=B7", "accession": "GCA_001889605.1", "taxid": 1670800, "species_taxid": 1670800, "relation_to_type": "type", "validated": true, "ani": 78.6042, "matched_fragments": 508, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 78.5719, "matched_fragments": 483, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans xinjiangense", "strain": "strain=lm93", "accession": "GCA_009812055.1", "taxid": 2681485, "species_taxid": 2681485, "relation_to_type": "type", "validated": true, "ani": 78.5482, "matched_fragments": 454, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium defluvii", "strain": "strain=DSM 11603", "accession": "GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 78.5422, "matched_fragments": 419, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 78.5006, "matched_fragments": 503, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans alearense", "strain": "strain=UJN715", "accession": "GCA_010993735.1", "taxid": 2681495, "species_taxid": 2681495, "relation_to_type": "type", "validated": true, "ani": 78.37, "matched_fragments": 449, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 78.3471, "matched_fragments": 485, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.2478, "matched_fragments": 358, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 78.2382, "matched_fragments": 359, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor indicus", "strain": "strain=C115", "accession": "GCA_000300515.1", "taxid": 721133, "species_taxid": 721133, "relation_to_type": "type", "validated": true, "ani": 78.0879, "matched_fragments": 344, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella lutilitoris", "strain": "strain=GH2-6", "accession": "GCA_005924265.1", "taxid": 2583532, "species_taxid": 2583532, "relation_to_type": "type", "validated": true, "ani": 77.8835, "matched_fragments": 294, "total_fragments": 1541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", 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}, { "accession": "GCF_900177325.1", "gtdb_species": "s__Mesorhizobium_A australicum_A", "ani": 78.7227, "matched_fragments": 516, "total_fragments": 1541, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003148475.1", "gtdb_species": "s__Pseudaminobacter salicylatoxidans", "ani": 78.7167, "matched_fragments": 446, "total_fragments": 1541, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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78.5122, "matched_fragments": 492, "total_fragments": 1541, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0866, "mean_intra_species_ani": "97.39", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003666685.1", "gtdb_species": "s__RCIZ01 sp003666685", "ani": 78.4229, "matched_fragments": 452, "total_fragments": 1541, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RCIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016756615.1", "gtdb_species": "s__DUSC01 sp016756615", "ani": 78.2674, "matched_fragments": 509, "total_fragments": 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