{ "type": "genome", "identifier": "GCA_002708905.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Tara Oceans Consortium", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002708905.1", "bioproject": "PRJNA391943", "biosample": "SAMN07619833", "wgs_master": "PAPM00000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "SP163", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/10/25", "asm_name": "ASM270890v1", "submitter": "Tara Oceans Consortium", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/708/905/GCA_002708905.1_ASM270890v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-10-25", "dateModified": "2017-10-25", "datePublished": "2017-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.6, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5418417", "Number of Sequences": "48", "Longest Sequences (bp)": "382759", "N50 (bp)": "241626", "Gap Ratio (%)": "0.002399", "GCcontent (%)": "52.7", "Number of CDSs": "4762", "Average Protein Length": "343.1", "Coding Ratio (%)": "90.5", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ketobacter alkanivorans", "strain": "strain=GI5", "accession": "GCA_002863865.1", "taxid": 1917421, "species_taxid": 1917421, "relation_to_type": "type", "validated": true, "ani": 78.6372, "matched_fragments": 550, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 76.2636, "matched_fragments": 84, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 76.2089, "matched_fragments": 54, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter algicola", "strain": "strain=DG893", "accession": "GCA_000170835.1", "taxid": 236100, "species_taxid": 236100, "relation_to_type": "type", "validated": true, "ani": 76.1422, "matched_fragments": 51, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 75.9714, "matched_fragments": 57, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 75.9564, "matched_fragments": 56, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 75.8628, "matched_fragments": 61, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 75.8074, "matched_fragments": 70, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=NBRC 12694", "accession": "GCA_002091755.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7812, "matched_fragments": 61, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=DSM 14399", "accession": "GCA_012986245.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7397, "matched_fragments": 61, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 75.7047, "matched_fragments": 59, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter aromaticivorans", "strain": "strain=D15-8P", "accession": "GCA_002806975.1", "taxid": 1494078, "species_taxid": 1494078, "relation_to_type": "type", "validated": true, "ani": 75.6515, "matched_fragments": 55, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 75.5224, "matched_fragments": 68, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas izuensis", "strain": "strain=IzPS43_3003", "accession": "GCA_009861505.1", "taxid": 2684212, "species_taxid": 2684212, "relation_to_type": "type", "validated": true, "ani": 75.5213, "matched_fragments": 58, "total_fragments": 1783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 75.5048, "matched_fragments": 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