{ "type": "genome", "identifier": "GCA_002749345.1", "organism": "Arcobacter sp.", "title": "Arcobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Stanford University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_002749345.1", "bioproject": "PRJNA174530", "biosample": "SAMN07757513", "wgs_master": "PDRM00000000.1", "refseq_category": "na", "taxid": "1872629", "species_taxid": "1872629", "organism_name": "Arcobacter sp.", "infraspecific_name": "", "isolate": "DOLZORAL124_29_21", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/03", "asm_name": "ASM274934v1", "submitter": "Stanford University School of Medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/749/345/GCA_002749345.1_ASM274934v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-03", "dateModified": "2017-11-03", "datePublished": "2017-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter sp." ], "sample_taxid": [ "1872629" ], "sample_host_organism": [ "Tursiops truncatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: San Diego Bay, CA" ], "sample_host_location_id": [], "data_size": "0.327 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.45, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1186383", "Number of Sequences": "128", "Longest Sequences (bp)": "120611", "N50 (bp)": "41441", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.2", "Number of CDSs": "1113", "Average Protein Length": "297.9", "Coding Ratio (%)": "83.9", "Number of rRNAs": "1", "Number of tRNAs": "17", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter aquimarinus", "strain": "strain=W63", "accession": "GCA_013177635.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 76.9157, "matched_fragments": 90, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=CECT 8442", "accession": "GCA_004115795.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 76.91, "matched_fragments": 86, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": 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1080223, "relation_to_type": "type", "validated": true, "ani": 76.7956, "matched_fragments": 73, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=LMG 26638", "accession": "GCA_004214795.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 76.7943, "matched_fragments": 75, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 76.7911, "matched_fragments": 101, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": "GCA_004214815.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.7678, "matched_fragments": 73, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 76.6988, "matched_fragments": 94, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter acticola", "strain": "strain=KCTC 52212", "accession": "GCA_013177675.1", "taxid": 1849015, "species_taxid": 1849015, "relation_to_type": "type", "validated": true, "ani": 76.6355, "matched_fragments": 87, "total_fragments": 329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter caeni", "strain": "strain=RW17-10", "accession": "GCA_003063245.1", "taxid": 1912877, "species_taxid": 1912877, "relation_to_type": "type", "validated": true, "ani": 76.6267, "matched_fragments": 86, "total_fragments": 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