{ "type": "genome", "identifier": "GCA_003020945.1", "organism": "Halobacteriales archaeon QS_6_71_20", "title": "Halobacteriales archaeon QS_6_71_20", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "None", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003020945.1", "bioproject": "PRJNA351262", "biosample": "SAMN06020785", "wgs_master": "PXRU00000000.1", "refseq_category": "na", "taxid": "1919183", "species_taxid": "1919183", "organism_name": "Halobacteriales archaeon QS_6_71_20", "infraspecific_name": "", "isolate": "QS_6_71_20", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/27", "asm_name": "ASM302094v1", "submitter": "None", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/020/945/GCA_003020945.1_ASM302094v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-27", "dateModified": "2018-03-27", "datePublished": "2018-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacteriales archaeon QS_6_71_20" ], "sample_taxid": [ "1919183" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Desert" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2647290", "Number of Sequences": "32", "Longest Sequences (bp)": "259108", "N50 (bp)": "111432", "Gap Ratio (%)": "0.064405", "GCcontent (%)": "70.9", "Number of CDSs": "2661", "Average Protein Length": "278.5", "Coding Ratio (%)": "84.0", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobaculum roseum", "strain": "strain=CGMCC 1.15501", "accession": "GCA_019880245.1", "taxid": 2175149, "species_taxid": 2175149, "relation_to_type": "type", "validated": true, "ani": 85.077, "matched_fragments": 678, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum saliterrae", "strain": "strain=WSA2", "accession": "GCA_009831625.1", "taxid": 2073113, "species_taxid": 2073113, "relation_to_type": "type", "validated": true, "ani": 84.8328, "matched_fragments": 682, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum magnesiiphilum", "strain": "strain=NBRC 109044", "accession": "GCA_019823105.1", "taxid": 1017351, "species_taxid": 1017351, "relation_to_type": "type", "validated": true, "ani": 84.8148, "matched_fragments": 704, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum rubrum", "strain": "strain=C46", "accession": "GCA_019880225.1", "taxid": 2872158, "species_taxid": 2872158, "relation_to_type": "type", "validated": true, "ani": 84.6379, "matched_fragments": 652, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum gomorrense", "strain": "strain=DSM 9297", "accession": "GCA_900129775.1", "taxid": 43928, "species_taxid": 43928, "relation_to_type": "type", "validated": true, "ani": 84.0606, "matched_fragments": 663, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum halophilum", "strain": "strain=Gai3-2", "accession": "GCA_013401515.1", "taxid": 2743090, "species_taxid": 2743090, "relation_to_type": "type", "validated": true, "ani": 80.8725, "matched_fragments": 572, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003020945.1", "gtdb_species": "s__Halobaculum sp003020945", "ani": 100.0, "matched_fragments": 866, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009831625.1", "gtdb_species": "s__Halobaculum sp009831625", "ani": 84.8541, "matched_fragments": 680, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129775.1", "gtdb_species": "s__Halobaculum gomorrense", "ani": 84.0352, "matched_fragments": 665, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013402875.1", "gtdb_species": "s__Halobaculum sp013402875", "ani": 80.9034, "matched_fragments": 579, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013401515.1", "gtdb_species": "s__Halobaculum sp013401515", "ani": 80.8793, "matched_fragments": 571, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000495475.1", "gtdb_species": "s__Halobaculum tyrrellense", "ani": 80.8465, "matched_fragments": 553, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018609965.1", "gtdb_species": "s__Halobaculum sp018609965", "ani": 78.0045, "matched_fragments": 281, "total_fragments": 868, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.08, "cell_length": 0.162, "doubling_h": 0.921, "growth_tmp": 38.072, "optimum_tmp": 39.519, "optimum_ph": 6.881, "genome_size": 3619346.25, "gc_content": 62.468, "coding_genes": 3001.894, "rRNA16S_genes": 1.726, "tRNA_genes": 47.217, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.322, "range_salinity": 1.0, "facultative_respiration": 0.039, "anaerobic_respiration": 0.196, "aerobic_respiration": 0.764, "mesophilic_range_tmp": 0.909, "thermophilic_range_tmp": 0.09, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.571, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.095, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Halobacteria", "o__Halobacteriales", "f__Haloferacaceae", "g__Halobaculum", "s__Halobaculum sp003020945" ], "_genome_taxon": [ "Halobacteriales", "archaeon", "QS_6_71_20", "d__Archaea", "p__Halobacteriota", "c__Halobacteria", "o__Halobacteriales", "f__Haloferacaceae", "g__Halobaculum", "s__Halobaculum sp003020945", "Archaea", "Halobacteriota", "Halobacteria", "Halobacteriales", "Haloferacaceae", "Halobaculum", "Halobaculum", "sp003020945" ], "_meo": [ { "id": "MEO_0000196", "label": "desert" }, { "id": "MEO_0000722", "label": "salt" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }