{ "type": "genome", "identifier": "GCA_003152855.1", "organism": "Rhodocyclaceae bacterium", "title": "Rhodocyclaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics, The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003152855.1", "bioproject": "PRJNA386568", "biosample": "SAMN08179802", "wgs_master": "PMBD00000000.1", "refseq_category": "na", "taxid": "1898103", "species_taxid": "1898103", "organism_name": "Rhodocyclaceae bacterium", "infraspecific_name": "", "isolate": "fen_1001", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "20120700_E3M", "submitter": "Australian Centre for Ecogenomics, The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/152/855/GCA_003152855.1_20120700_E3M", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodocyclaceae bacterium" ], "sample_taxid": [ "1898103" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Stordalen Mire" ], "sample_host_location_id": [], "data_size": "0.917 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.01, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3245784", "Number of Sequences": "462", "Longest Sequences (bp)": "67985", "N50 (bp)": "8458", "Gap Ratio (%)": "0.246165", "GCcontent (%)": "62.4", "Number of CDSs": "2925", "Average Protein Length": "284.3", "Coding Ratio (%)": "76.8", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.7858, "matched_fragments": 197, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.7812, "matched_fragments": 198, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 76.6893, "matched_fragments": 108, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgfuchsia toluolica", "strain": "strain=G5G6", "accession": "GCA_907163265.1", "taxid": 424218, "species_taxid": 424218, "relation_to_type": "type", "validated": true, "ani": 76.6046, "matched_fragments": 103, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis universalis", "strain": "strain=FAM5", "accession": "GCA_000214035.3", "taxid": 378211, "species_taxid": 378211, "relation_to_type": "type", "validated": true, "ani": 76.5808, "matched_fragments": 96, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus fungiphilus", "strain": "strain=DSM 23841", "accession": "GCA_003634965.1", "taxid": 146940, "species_taxid": 146940, "relation_to_type": "type", "validated": true, "ani": 76.553, "matched_fragments": 149, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 76.3316, "matched_fragments": 110, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 76.2694, "matched_fragments": 111, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis 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"accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 75.5528, "matched_fragments": 70, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 75.4504, "matched_fragments": 74, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_001040945.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 75.3152, "matched_fragments": 65, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.01, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003157035.1", 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