{
    "type": "genome",
    "identifier": "GCA_003155195.1",
    "organism": "Acidimicrobiaceae bacterium",
    "title": "Acidimicrobiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Australian Centre for Ecogenomics, The University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_003155195.1",
        "bioproject": "PRJNA386568",
        "biosample": "SAMN08179681",
        "wgs_master": "PMFR00000000.1",
        "refseq_category": "na",
        "taxid": "2024894",
        "species_taxid": "2024894",
        "organism_name": "Acidimicrobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "bog_714",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/24",
        "asm_name": "20120600_S2S",
        "submitter": "Australian Centre for Ecogenomics, The University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/155/195/GCA_003155195.1_20120600_S2S",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-24",
    "dateModified": "2018-05-24",
    "datePublished": "2018-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidimicrobiaceae bacterium"
        ],
        "sample_taxid": [
            "2024894"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Stordalen Mire"
        ],
        "sample_host_location_id": [],
        "data_size": "0.580 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2055840",
        "Number of Sequences": "73",
        "Longest Sequences (bp)": "133477",
        "N50 (bp)": "47454",
        "Gap Ratio (%)": "0.094754",
        "GCcontent (%)": "62.3",
        "Number of CDSs": "2080",
        "Average Protein Length": "288.9",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomarinicola tropica",
                "strain": "strain=SCSIO 58843",
                "accession": "GCA_009650215.1",
                "taxid": 2789776,
                "species_taxid": 2789776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5447,
                "matched_fragments": 55,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 93.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003160115.1",
                "gtdb_species": "s__RAAP-2 sp003160115",
                "ani": 99.6935,
                "matched_fragments": 557,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003133125.1",
                "gtdb_species": "s__RAAP-2 sp003133125",
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                "matched_fragments": 391,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_003163875.1",
                "gtdb_species": "s__RAAP-2 sp003163875",
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                "matched_fragments": 193,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017883045.1",
                "gtdb_species": "s__RAAP-2 sp017883045",
                "ani": 79.0389,
                "matched_fragments": 245,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003158855.1",
                "gtdb_species": "s__RAAP-2 sp003158855",
                "ani": 78.8799,
                "matched_fragments": 261,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003138815.1",
                "gtdb_species": "s__RAAP-2 sp003138815",
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                "matched_fragments": 248,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCA_003132205.1",
                "gtdb_species": "s__RAAP-2 sp003132205",
                "ani": 78.7585,
                "matched_fragments": 261,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003170315.1",
                "gtdb_species": "s__RAAP-2 sp003170315",
                "ani": 78.4083,
                "matched_fragments": 177,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003136495.1",
                "gtdb_species": "s__RAAP-2 sp003136495",
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                "matched_fragments": 173,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_003133665.1",
                "gtdb_species": "s__RAAP-2 sp003133665",
                "ani": 78.2392,
                "matched_fragments": 208,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003133685.1",
                "gtdb_species": "s__RAAP-2 sp003133685",
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                "matched_fragments": 198,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003141095.1",
                "gtdb_species": "s__RAAP-2 sp003141095",
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                "matched_fragments": 230,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.55",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_003168075.1",
                "gtdb_species": "s__RAAP-2 sp003168075",
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                "matched_fragments": 139,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
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                "mean_intra_species_ani": "99.34",
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            },
            {
                "accession": "GCA_003132305.1",
                "gtdb_species": "s__RAAP-2 sp003132305",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCA_003152555.1",
                "gtdb_species": "s__RAAP-2 sp003152555",
                "ani": 77.1763,
                "matched_fragments": 128,
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                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.38",
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                "status": "-"
            },
            {
                "accession": "GCA_903828785.1",
                "gtdb_species": "s__RAAP-2 sp903828785",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
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                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.343,
        "doubling_h": null,
        "growth_tmp": 37.25,
        "optimum_tmp": 39.0,
        "optimum_ph": 1.9,
        "genome_size": 2693748.75,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.25,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__RAAP-2",
        "g__RAAP-2",
        "s__RAAP-2 sp003160115"
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    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__RAAP-2",
        "g__RAAP-2",
        "s__RAAP-2 sp003160115",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "RAAP-2",
        "RAAP-2",
        "RAAP-2",
        "sp003160115"
    ],
    "_meo": [
        {
            "id": "MEO_0000204",
            "label": "peat"
        },
        {
            "id": "MEO_0000093",
            "label": "permafrost"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}