{
    "type": "genome",
    "identifier": "GCA_003159595.1",
    "organism": "Acidimicrobiaceae bacterium",
    "title": "Acidimicrobiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Australian Centre for Ecogenomics, The University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_003159595.1",
        "bioproject": "PRJNA386568",
        "biosample": "SAMN08180045",
        "wgs_master": "PLPR00000000.1",
        "refseq_category": "na",
        "taxid": "2024894",
        "species_taxid": "2024894",
        "organism_name": "Acidimicrobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "bog_791",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/24",
        "asm_name": "20120700_S3D",
        "submitter": "Australian Centre for Ecogenomics, The University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/159/595/GCA_003159595.1_20120700_S3D",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-24",
    "dateModified": "2018-05-24",
    "datePublished": "2018-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidimicrobiaceae bacterium"
        ],
        "sample_taxid": [
            "2024894"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Stordalen Mire"
        ],
        "sample_host_location_id": [],
        "data_size": "0.722 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2587266",
        "Number of Sequences": "79",
        "Longest Sequences (bp)": "154147",
        "N50 (bp)": "68978",
        "Gap Ratio (%)": "0.023732",
        "GCcontent (%)": "65.6",
        "Number of CDSs": "2463",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomarinicola tropica",
                "strain": "strain=SCSIO 58843",
                "accession": "GCA_009650215.1",
                "taxid": 2789776,
                "species_taxid": 2789776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4851,
                "matched_fragments": 130,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3944,
                "matched_fragments": 91,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter fluminis",
                "strain": "strain=DSM 18936",
                "accession": "GCA_004364865.1",
                "taxid": 467091,
                "species_taxid": 467091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0123,
                "matched_fragments": 82,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola salaria",
                "strain": "strain=EGI L10124",
                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9766,
                "matched_fragments": 124,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertimonas flava",
                "strain": "strain=SYSU D60003",
                "accession": "GCA_003426815.1",
                "taxid": 2064846,
                "species_taxid": 2064846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9655,
                "matched_fragments": 127,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Knoellia remsis",
                "strain": "strain=ATCC BAA-1496",
                "accession": "GCA_003002895.1",
                "taxid": 407159,
                "species_taxid": 407159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8059,
                "matched_fragments": 73,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides kribbensis",
                "strain": "strain=DSM 16314",
                "accession": "GCA_015070375.1",
                "taxid": 305517,
                "species_taxid": 305517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6926,
                "matched_fragments": 122,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter nonamiensis",
                "strain": "strain=YM16-303",
                "accession": "GCA_000350145.1",
                "taxid": 467093,
                "species_taxid": 467093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6771,
                "matched_fragments": 80,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tessaracoccus aquimaris",
                "strain": "strain=NSG39",
                "accession": "GCA_001997345.1",
                "taxid": 1332264,
                "species_taxid": 1332264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5608,
                "matched_fragments": 60,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces acidicola",
                "strain": "strain=K1PN6",
                "accession": "GCA_009377235.1",
                "taxid": 2596892,
                "species_taxid": 2596892,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5165,
                "matched_fragments": 85,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces bluensis",
                "strain": "strain=JCM 4729",
                "accession": "GCA_014650715.1",
                "taxid": 33897,
                "species_taxid": 33897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4824,
                "matched_fragments": 83,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Modestobacter excelsi",
                "strain": "strain=1G6",
                "accession": "GCA_005930495.1",
                "taxid": 2213161,
                "species_taxid": 2213161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4617,
                "matched_fragments": 91,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis alborubida",
                "strain": "strain=ATCC 23612",
                "accession": "GCA_012396365.1",
                "taxid": 146802,
                "species_taxid": 146802,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4362,
                "matched_fragments": 83,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus xinjiangensis",
                "strain": "strain=DSM 22857",
                "accession": "GCA_002934625.1",
                "taxid": 512762,
                "species_taxid": 512762,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4191,
                "matched_fragments": 75,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis",
                "strain": "strain=D1",
                "accession": "GCA_902825375.1",
                "taxid": 2580523,
                "species_taxid": 2014,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3911,
                "matched_fragments": 80,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces angustmyceticus",
                "strain": "strain=JCM 4053",
                "accession": "GCA_019933235.1",
                "taxid": 285578,
                "species_taxid": 285578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3546,
                "matched_fragments": 87,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineococcus vitellinus",
                "strain": "strain=T13",
                "accession": "GCA_009906315.1",
                "taxid": 2696565,
                "species_taxid": 2696565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3001,
                "matched_fragments": 88,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinocorallia herbida",
                "strain": "strain=DSM 44254",
                "accession": "GCA_003751225.1",
                "taxid": 58109,
                "species_taxid": 58109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2769,
                "matched_fragments": 120,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catellatospora citrea",
                "strain": "strain=NBRC 14495",
                "accession": "GCA_016862615.1",
                "taxid": 53366,
                "species_taxid": 53366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.246,
                "matched_fragments": 106,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Catellatospora paridis",
                "strain": "strain=NEAU-CL2",
                "accession": "GCA_009720365.1",
                "taxid": 1617086,
                "species_taxid": 1617086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2448,
                "matched_fragments": 117,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromyxobacter dehalogenans",
                "strain": "strain=2CP-1",
                "accession": "GCA_000022145.1",
                "taxid": 161493,
                "species_taxid": 161493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0057,
                "matched_fragments": 88,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dokdonella fugitiva",
                "strain": "strain=A3",
                "accession": "GCA_004342425.1",
                "taxid": 328517,
                "species_taxid": 328517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9533,
                "matched_fragments": 68,
                "total_fragments": 823,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003138815.1",
                "gtdb_species": "s__RAAP-2 sp003138815",
                "ani": 99.8303,
                "matched_fragments": 763,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 28,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017883045.1",
                "gtdb_species": "s__RAAP-2 sp017883045",
                "ani": 80.7284,
                "matched_fragments": 338,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003133665.1",
                "gtdb_species": "s__RAAP-2 sp003133665",
                "ani": 79.9424,
                "matched_fragments": 364,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003132165.1",
                "gtdb_species": "s__RAAP-2 sp003132165",
                "ani": 79.6562,
                "matched_fragments": 320,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.70",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903860745.1",
                "gtdb_species": "s__RAAP-2 sp903860745",
                "ani": 79.5378,
                "matched_fragments": 291,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017882985.1",
                "gtdb_species": "s__RAAP-2 sp017882985",
                "ani": 79.4283,
                "matched_fragments": 181,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003133685.1",
                "gtdb_species": "s__RAAP-2 sp003133685",
                "ani": 79.004,
                "matched_fragments": 291,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003152555.1",
                "gtdb_species": "s__RAAP-2 sp003152555",
                "ani": 78.8213,
                "matched_fragments": 199,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018971185.1",
                "gtdb_species": "s__RAAP-2 sp018971185",
                "ani": 78.8207,
                "matched_fragments": 269,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003167415.1",
                "gtdb_species": "s__RAAP-2 sp003167415",
                "ani": 78.7248,
                "matched_fragments": 288,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.12",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003155915.1",
                "gtdb_species": "s__RAAP-2 sp003155915",
                "ani": 78.6232,
                "matched_fragments": 299,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCA_003170315.1",
                "gtdb_species": "s__RAAP-2 sp003170315",
                "ani": 78.6167,
                "matched_fragments": 271,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003151555.1",
                "gtdb_species": "s__RAAP-2 sp003151555",
                "ani": 78.5569,
                "matched_fragments": 250,
                "total_fragments": 823,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__RAAP-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.343,
        "doubling_h": null,
        "growth_tmp": 37.25,
        "optimum_tmp": 39.0,
        "optimum_ph": 1.9,
        "genome_size": 2693748.75,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.25,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.333,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__RAAP-2",
        "g__RAAP-2",
        "s__RAAP-2 sp003138815"
    ],
    "_genome_taxon": [
        "Acidimicrobiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__RAAP-2",
        "g__RAAP-2",
        "s__RAAP-2 sp003138815",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "RAAP-2",
        "RAAP-2",
        "RAAP-2",
        "sp003138815"
    ],
    "_meo": [
        {
            "id": "MEO_0000204",
            "label": "peat"
        },
        {
            "id": "MEO_0000093",
            "label": "permafrost"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}