{ "type": "genome", "identifier": "GCA_003161045.1", "organism": "Acidobacteriaceae bacterium", "title": "Acidobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics, The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003161045.1", "bioproject": "PRJNA386568", "biosample": "SAMN08178807", "wgs_master": "PMPH00000000.1", "refseq_category": "na", "taxid": "2052142", "species_taxid": "2052142", "organism_name": "Acidobacteriaceae bacterium", "infraspecific_name": "", "isolate": "bog_96", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/25", "asm_name": "20110600_S1D", "submitter": "Australian Centre for Ecogenomics, The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/161/045/GCA_003161045.1_20110600_S1D", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-25", "dateModified": "2018-05-25", "datePublished": "2018-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidobacteriaceae bacterium" ], "sample_taxid": [ "2052142" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Stordalen Mire" ], "sample_host_location_id": [], "data_size": "0.770 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2724402", "Number of Sequences": "169", "Longest Sequences (bp)": "77526", "N50 (bp)": "23596", "Gap Ratio (%)": "0.049662", "GCcontent (%)": "62.3", "Number of CDSs": "2269", "Average Protein Length": "311.5", "Coding Ratio (%)": "77.8", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Occallatibacter riparius", "strain": "strain=DSM 25168", "accession": "GCA_025264625.1", "taxid": 1002689, "species_taxid": 1002689, "relation_to_type": "type", "validated": true, "ani": 76.9259, "matched_fragments": 209, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terracidiphilus gabretensis", "strain": "strain=S55", "accession": "GCA_001449115.1", "taxid": 1577687, "species_taxid": 1577687, "relation_to_type": "type", "validated": true, "ani": 76.8078, "matched_fragments": 157, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.8011, "matched_fragments": 135, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.7859, "matched_fragments": 135, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.7655, "matched_fragments": 126, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.5044, "matched_fragments": 129, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=S15", "accession": "GCA_001006305.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.5037, "matched_fragments": 131, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipila rosea", "strain": "strain=DSM 103428", "accession": "GCA_004339725.1", "taxid": 768535, "species_taxid": 768535, "relation_to_type": "type", "validated": true, "ani": 76.4743, "matched_fragments": 89, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 18704", "accession": "GCA_900188085.1", "taxid": 474952, "species_taxid": 474952, "relation_to_type": "type", "validated": true, "ani": 76.427, "matched_fragments": 119, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bryocella elongata", "strain": "strain=DSM 22489", "accession": "GCA_900108185.1", "taxid": 863522, "species_taxid": 863522, "relation_to_type": "type", "validated": true, "ani": 76.2061, "matched_fragments": 82, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9749, "matched_fragments": 56, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", 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], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }