{ "type": "genome", "identifier": "GCA_003162255.1", "organism": "Acidobacteriaceae bacterium", "title": "Acidobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics, The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003162255.1", "bioproject": "PRJNA386568", "biosample": "SAMN08178728", "wgs_master": "PMMJ00000000.1", "refseq_category": "na", "taxid": "2052142", "species_taxid": "2052142", "organism_name": "Acidobacteriaceae bacterium", "infraspecific_name": "", "isolate": "fen_85", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/25", "asm_name": "20100900_E1D", "submitter": "Australian Centre for Ecogenomics, The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/162/255/GCA_003162255.1_20100900_E1D", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-25", "dateModified": "2018-05-25", "datePublished": "2018-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidobacteriaceae bacterium" ], "sample_taxid": [ "2052142" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Stordalen Mire" ], "sample_host_location_id": [], "data_size": "1.739 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.9, "contamination": 3.12, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6056979", "Number of Sequences": "560", "Longest Sequences (bp)": "65655", "N50 (bp)": "15837", "Gap Ratio (%)": "0.154532", "GCcontent (%)": "58.0", "Number of CDSs": "5217", "Average Protein Length": "296.7", "Coding Ratio (%)": "76.7", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Silvibacterium bohemicum", "strain": "strain=S15", "accession": "GCA_001006305.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.1775, "matched_fragments": 59, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.1774, "matched_fragments": 59, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 75.6922, "matched_fragments": 55, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 75.671, "matched_fragments": 54, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 75.5457, "matched_fragments": 73, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 18704", "accession": "GCA_900188085.1", "taxid": 474952, "species_taxid": 474952, "relation_to_type": "type", "validated": true, "ani": 75.3188, "matched_fragments": 55, "total_fragments": 1734, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.9, "contamination": 3.12, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003162255.1", "gtdb_species": "s__Bog-209 sp003162255", "ani": 100.0, "matched_fragments": 1708, "total_fragments": 1734, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__SbA1;g__Bog-209", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_003131315.1", "gtdb_species": "s__Bog-209 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