{ "type": "genome", "identifier": "GCA_003162855.1", "organism": "Granulicella sp.", "title": "Granulicella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics, The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003162855.1", "bioproject": "PRJNA386568", "biosample": "SAMN08180244", "wgs_master": "PLUS00000000.1", "refseq_category": "na", "taxid": "1969471", "species_taxid": "1969471", "organism_name": "Granulicella sp.", "infraspecific_name": "", "isolate": "bog_446", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/25", "asm_name": "20120800_S3X", "submitter": "Australian Centre for Ecogenomics, The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/162/855/GCA_003162855.1_20120800_S3X", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-25", "dateModified": "2018-05-25", "datePublished": "2018-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Granulicella sp." ], "sample_taxid": [ "1969471" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden: Stordalen Mire" ], "sample_host_location_id": [], "data_size": "0.850 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2985672", "Number of Sequences": "111", "Longest Sequences (bp)": "166880", "N50 (bp)": "40458", "Gap Ratio (%)": "0.051178", "GCcontent (%)": "60.4", "Number of CDSs": "2664", "Average Protein Length": "313.3", "Coding Ratio (%)": "83.9", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, "relation_to_type": "type", "validated": true, "ani": 78.5922, "matched_fragments": 342, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bryocella elongata", "strain": "strain=DSM 22489", "accession": "GCA_900108185.1", "taxid": 863522, "species_taxid": 863522, "relation_to_type": "type", "validated": true, "ani": 78.2294, "matched_fragments": 269, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 78.2175, "matched_fragments": 228, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter dinghuensis", "strain": "strain=CGMCC 1.12997", "accession": "GCA_014640335.1", "taxid": 1560005, "species_taxid": 1560005, "relation_to_type": "type", "validated": true, "ani": 78.0353, "matched_fragments": 153, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella pectinivorans", "strain": "strain=DSM 21001", "accession": "GCA_900114625.1", "taxid": 474950, "species_taxid": 474950, "relation_to_type": "type", "validated": true, "ani": 77.8875, "matched_fragments": 203, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella tundricola", "strain": "strain=MP5ACTX9", "accession": "GCA_000178975.2", "taxid": 940615, "species_taxid": 940615, "relation_to_type": "type", "validated": true, "ani": 77.8415, "matched_fragments": 191, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6793, "matched_fragments": 166, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter flagellatus", "strain": "strain=HZ411", "accession": "GCA_025264665.1", "taxid": 1933044, "species_taxid": 1933044, "relation_to_type": "type", "validated": true, "ani": 77.4703, "matched_fragments": 155, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella rosea", "strain": "strain=DSM 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1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.6853, "matched_fragments": 120, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.6818, "matched_fragments": 119, "total_fragments": 946, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.12, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003138795.1", "gtdb_species": "s__UBA5172 sp003138795", "ani": 99.8049, "matched_fragments": 847, "total_fragments": 946, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__UBA5172", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.67", 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