{
    "type": "genome",
    "identifier": "GCA_003241685.1",
    "organism": "Sphingopyxis macrogoltabida",
    "title": "Sphingopyxis macrogoltabida",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "None",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_003241685.1",
        "bioproject": "PRJNA376580",
        "biosample": "SAMN07426547",
        "wgs_master": "QFPJ00000000.1",
        "refseq_category": "na",
        "taxid": "33050",
        "species_taxid": "33050",
        "organism_name": "Sphingopyxis macrogoltabida",
        "infraspecific_name": "",
        "isolate": "S2_005_003_R2_47",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/18",
        "asm_name": "ASM324168v1",
        "submitter": "None",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/241/685/GCA_003241685.1_ASM324168v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-18",
    "dateModified": "2018-06-18",
    "datePublished": "2018-06-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingopyxis macrogoltabida"
        ],
        "sample_taxid": [
            "33050"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Pennsylvania Magee Womens Hospital"
        ],
        "sample_host_location_id": [],
        "data_size": "0.972 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 239.0,
            "max": 239.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3552049",
        "Number of Sequences": "156",
        "Longest Sequences (bp)": "221133",
        "N50 (bp)": "72801",
        "Gap Ratio (%)": "0.000535",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "3241",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sphingopyxis soli",
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                "accession": "GCA_018682675.1",
                "taxid": 592051,
                "species_taxid": 592051,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 729,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis macrogoltabida",
                "strain": "strain=203",
                "accession": "GCA_001314325.1",
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                "species_taxid": 33050,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 797,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis lindanitolerans",
                "strain": "strain=WS5A3p",
                "accession": "GCA_002993885.1",
                "taxid": 2054227,
                "species_taxid": 2054227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2924,
                "matched_fragments": 753,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. terrae",
                "strain": "strain=NBRC 15098",
                "accession": "GCA_001598815.1",
                "taxid": 2448440,
                "species_taxid": 33052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2725,
                "matched_fragments": 746,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis italica",
                "strain": "strain=DSM 25229",
                "accession": "GCA_011926545.1",
                "taxid": 1129133,
                "species_taxid": 1129133,
                "relation_to_type": "type",
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                "ani": 84.258,
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                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis alaskensis",
                "strain": "strain=RB2256",
                "accession": "GCA_000013985.1",
                "taxid": 117207,
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                "relation_to_type": "type",
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                "ani": 84.2266,
                "matched_fragments": 734,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis granuli",
                "strain": "strain=NBRC 100800",
                "accession": "GCA_001591045.1",
                "taxid": 267128,
                "species_taxid": 267128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1258,
                "matched_fragments": 705,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. terrae",
                "strain": "strain=203-1",
                "accession": "GCA_001610975.1",
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                "species_taxid": 33052,
                "relation_to_type": "type",
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                "ani": 84.0989,
                "matched_fragments": 755,
                "total_fragments": 1107,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. ummariensis",
                "strain": "strain=DSM 24316",
                "accession": "GCA_002374275.1",
                "taxid": 429001,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis terrae subsp. ummariensis",
                "strain": "strain=UI2",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0602,
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                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis microcysteis",
                "strain": "strain=Z10-6",
                "accession": "GCA_012274265.1",
                "taxid": 2484145,
                "species_taxid": 2484145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8677,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis panaciterrulae",
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                "accession": "GCA_014199295.1",
                "taxid": 462372,
                "species_taxid": 462372,
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                "validated": true,
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                "matched_fragments": 750,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis solisilvae",
                "strain": "strain=R366",
                "accession": "GCA_015475875.1",
                "taxid": 1886788,
                "species_taxid": 1886788,
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                "ani": 83.6975,
                "matched_fragments": 717,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4993,
                "matched_fragments": 389,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
                "taxid": 2320861,
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                "ani": 78.3686,
                "matched_fragments": 358,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
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                "ani": 77.9681,
                "matched_fragments": 367,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas lutea",
                "strain": "strain=KCTC 23642",
                "accession": "GCA_021497585.1",
                "taxid": 1045317,
                "species_taxid": 1045317,
                "relation_to_type": "type",
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                "ani": 77.5858,
                "matched_fragments": 235,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas citri",
                "strain": "strain=RRHST34",
                "accession": "GCA_019429485.1",
                "taxid": 2862499,
                "species_taxid": 2862499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4864,
                "matched_fragments": 365,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 4.17,
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                "accession": "GCA_003241685.1",
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            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001314325.1",
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            {
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                "accession": "GCA_002842935.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_013410105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
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            },
            {
                "accession": "GCA_017309275.1",
                "gtdb_species": "s__Sphingopyxis sp017309275",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_001984035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016793775.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014199295.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003797775.2",
                "gtdb_species": "s__Sphingopyxis sp001427085",
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                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
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    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.437,
        "cell_length": -0.047,
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        "growth_tmp": 30.0,
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        "coding_genes": 5168.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.818,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.909,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.09,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingopyxis",
        "s__Sphingopyxis macrogoltabida_A"
    ],
    "_genome_taxon": [
        "Sphingopyxis",
        "macrogoltabida",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingopyxis",
        "s__Sphingopyxis macrogoltabida_A",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Sphingomonadales",
        "Sphingomonadaceae",
        "Sphingopyxis",
        "Sphingopyxis",
        "macrogoltabida",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000837",
            "label": "human activity associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}