{ "type": "genome", "identifier": "GCA_003242575.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Instituto de Quimica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003242575.1", "bioproject": "PRJNA317502", "biosample": "SAMN09092803", "wgs_master": "QGUW00000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "ZC4RG31", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/18", "asm_name": "ASM324257v1", "submitter": "Instituto de Quimica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/242/575/GCA_003242575.1_ASM324257v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-18", "dateModified": "2018-06-18", "datePublished": "2018-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.9, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3249756", "Number of Sequences": "244", "Longest Sequences (bp)": "71345", "N50 (bp)": "23374", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "2874", "Average Protein Length": "303.3", "Coding Ratio (%)": "80.5", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 77.3315, "matched_fragments": 140, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium zavarzinii", "strain": "strain=ZV-622", "accession": "GCA_000383415.1", "taxid": 48292, "species_taxid": 48292, "relation_to_type": "type", "validated": true, "ani": 77.3013, "matched_fragments": 125, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 77.1782, "matched_fragments": 97, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium nitrativorans", "strain": "strain=NL23", "accession": "GCA_000503895.1", "taxid": 1427356, "species_taxid": 1427356, "relation_to_type": "type", "validated": true, "ani": 77.1659, "matched_fragments": 109, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium facile", "strain": "strain=DSM 1565", "accession": "GCA_900116175.1", "taxid": 51670, "species_taxid": 51670, "relation_to_type": "type", "validated": true, "ani": 76.9887, "matched_fragments": 79, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_013306565.1", "taxid": 121290, "species_taxid": 121290, 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