<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2017-12-15T09:50:05.367" last_update="2018-01-19T13:40:59.000" submission_date="2017-11-13T20:19:14.193" id="8017817" accession="SAMN08017817">   <Ids>     <Id db="BioSample" is_primary="1">SAMN08017817</Id>     <Id db_label="Sample name">UBA8542</Id>     <Id db="SRA">SRS2845633</Id>   </Ids>   <Description>     <Title>Uncultivated Shigella bacterium UBA8542 genome recovered from SRX388464</Title>     <Organism taxonomy_id="625" taxonomy_name="Shigella sp.">       <OrganismName>Shigella sp.</OrganismName>     </Organism>     <Comment>       <Paragraph>Uncultivated genome recovered from an assembly of the SRX388464 metagenome.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>University of Queensland</Name>     <Contacts>       <Contact email="donovan.parks@gmail.com">         <Name>           <First>Donovan</First>           <Last>Parks</Last>         </Name>       </Contact>     </Contacts>   </Owner>   <Models>     <Model>Microbe, viral or environmental</Model>   </Models>   <Package display_name="Microbe; version 1.0">Microbe.1.0</Package>   <Attributes>     <Attribute attribute_name="isolate" harmonized_name="isolate" display_name="isolate">UBA8542</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">freshwater</Attribute>     <Attribute attribute_name="collection_date" harmonized_name="collection_date" display_name="collection date">not applicable</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not applicable</Attribute>     <Attribute attribute_name="sample_type" harmonized_name="sample_type" display_name="sample type">metagenomic assembly</Attribute>     <Attribute attribute_name="assembly_method">CLC de novo assembler</Attribute>     <Attribute attribute_name="assembly_method_version">4.4.1</Attribute>     <Attribute attribute_name="mapping_method">BWA (BWA-MEM)</Attribute>     <Attribute attribute_name="mapping_method_version">0.7.12-r1039</Attribute>     <Attribute attribute_name="genome_coverage">20.41x</Attribute>     <Attribute attribute_name="quality_assessment_method">CheckM</Attribute>     <Attribute attribute_name="quality_assessment_method_version">1.0.6</Attribute>     <Attribute attribute_name="completeness_estimated">90.11%</Attribute>     <Attribute attribute_name="contamination_estimated">0.74%</Attribute>     <Attribute attribute_name="metagenome_source">freshwater metagenome</Attribute>     <Attribute attribute_name="environmental_sample">true</Attribute>     <Attribute attribute_name="metagenomic">true</Attribute>     <Attribute attribute_name="note">freshwater metagenome</Attribute>     <Attribute attribute_name="value">This BioSample is a metagenomic assembly obtained from the freshwater metagenome reads: SRR1044677.</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject" label="PRJNA417962">417962</Link>   </Links>   <Status status="live" when="2017-12-15T09:50:05.367"/> </BioSample> </BioSampleSet>
