{ "type": "genome", "identifier": "GCA_003456545.1", "organism": "Hyphomicrobiales bacterium", "title": "Hyphomicrobiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003456545.1", "bioproject": "PRJNA417962", "biosample": "SAMN08018001", "wgs_master": "DMQU00000000.1", "refseq_category": "na", "taxid": "1909294", "species_taxid": "1909294", "organism_name": "Hyphomicrobiales bacterium", "infraspecific_name": "", "isolate": "UBA11352", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/05", "asm_name": "ASM345654v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/456/545/GCA_003456545.1_ASM345654v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-05", "dateModified": "2018-09-05", "datePublished": "2018-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Hyphomicrobiales bacterium" ], "sample_taxid": [ "1909294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.97, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2324345", "Number of Sequences": "379", "Longest Sequences (bp)": "26657", "N50 (bp)": "7251", "Gap Ratio (%)": "3.213680", "GCcontent (%)": "63.7", "Number of CDSs": "2021", "Average Protein Length": "247.3", "Coding Ratio (%)": "64.5", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloceanibacter superfactus", "strain": "strain=R-67175", "accession": "GCA_001723305.1", "taxid": 1774969, "species_taxid": 1774969, "relation_to_type": "type", "validated": true, "ani": 79.8489, "matched_fragments": 356, "total_fragments": 590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter marginalis", "strain": "strain=R-67177", "accession": "GCA_001723295.1", "taxid": 1774971, "species_taxid": 1774971, "relation_to_type": "type", "validated": true, "ani": 78.883, "matched_fragments": 235, "total_fragments": 590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloligella halotolerans", "strain": "strain=VKM 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