{ "type": "genome", "identifier": "GCA_003482965.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003482965.1", "bioproject": "PRJNA417962", "biosample": "SAMN08017539", "wgs_master": "DMXC00000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "UBA11796", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/06", "asm_name": "ASM348296v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/482/965/GCA_003482965.1_ASM348296v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-06", "dateModified": "2018-09-06", "datePublished": "2018-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.602 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.26, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2182842", "Number of Sequences": "365", "Longest Sequences (bp)": "30572", "N50 (bp)": "6841", "Gap Ratio (%)": "2.480573", "GCcontent (%)": "33.7", "Number of CDSs": "1621", "Average Protein Length": "295.3", "Coding Ratio (%)": "65.8", "Number of rRNAs": "0", "Number of tRNAs": "10", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceibacter atlanticus", "strain": "strain=HTCC2559", "accession": "GCA_000196315.1", "taxid": 313588, "species_taxid": 313588, "relation_to_type": "type", "validated": true, "ani": 98.582, "matched_fragments": 510, "total_fragments": 543, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.208, "matched_fragments": 75, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.208, "matched_fragments": 75, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella blandensis", "strain": "strain=MED217", "accession": "GCA_000152985.1", "taxid": 360293, "species_taxid": 360293, "relation_to_type": "type", "validated": true, "ani": 76.6253, "matched_fragments": 54, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella marinoflava", "strain": "strain=DSM 3653", "accession": "GCA_900129005.1", "taxid": 988, "species_taxid": 988, "relation_to_type": "type", "validated": true, "ani": 76.3894, "matched_fragments": 50, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 76.3668, "matched_fragments": 78, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wichelsiae", "strain": "strain=Z738", "accession": "GCA_013403925.1", "taxid": 2697007, "species_taxid": 2697007, "relation_to_type": "type", "validated": true, "ani": 76.3644, "matched_fragments": 80, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.1897, "matched_fragments": 52, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.1635, "matched_fragments": 66, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella palythoae", "strain": "strain=DSM 19859", "accession": "GCA_900130045.1", "taxid": 573501, "species_taxid": 573501, "relation_to_type": "type", "validated": true, "ani": 76.1453, "matched_fragments": 52, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.1221, "matched_fragments": 63, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella palythoae", "strain": "strain=LMG 24856", "accession": "GCA_004104045.1", "taxid": 573501, "species_taxid": 573501, "relation_to_type": "type", "validated": true, "ani": 76.1135, "matched_fragments": 53, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.0892, "matched_fragments": 63, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 76.0851, "matched_fragments": 65, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 75.9624, "matched_fragments": 61, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 75.9309, "matched_fragments": 63, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 75.8826, "matched_fragments": 71, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia oceanica", "strain": "strain=ISS653", "accession": "GCA_902499555.1", "taxid": 2687242, "species_taxid": 2687242, "relation_to_type": "type", "validated": true, "ani": 75.8662, "matched_fragments": 66, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina latercula", "strain": "strain=DSM 2041", "accession": "GCA_000430645.1", "taxid": 987, "species_taxid": 987, "relation_to_type": "type", "validated": true, "ani": 75.8659, "matched_fragments": 65, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 75.6452, "matched_fragments": 56, "total_fragments": 543, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 59.26, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000196315.1", "gtdb_species": "s__Croceibacter atlanticus", "ani": 98.582, "matched_fragments": 510, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Croceibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_014297365.1", "gtdb_species": "s__Winogradskyella echinorum", "ani": 77.208, "matched_fragments": 75, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014764305.1", "gtdb_species": "s__Mesoflavibacter profundi", "ani": 76.9035, "matched_fragments": 69, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mesoflavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002682935.1", "gtdb_species": "s__Winogradskyella sp002682935", "ani": 76.8068, "matched_fragments": 60, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000152985.1", "gtdb_species": "s__Leeuwenhoekiella blandensis", "ani": 76.6248, "matched_fragments": 54, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Leeuwenhoekiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.73", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_013213835.1", "gtdb_species": "s__Winogradskyella sp013213835", "ani": 76.5414, "matched_fragments": 53, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002364335.1", "gtdb_species": "s__Winogradskyella sp002364335", "ani": 76.4417, "matched_fragments": 70, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015319355.1", "gtdb_species": "s__Psychroserpens luteus", "ani": 76.4385, "matched_fragments": 66, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016864015.1", "gtdb_species": "s__Oceanihabitans sp016864015", "ani": 76.4349, "matched_fragments": 76, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Oceanihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129005.1", "gtdb_species": "s__Leeuwenhoekiella marinoflava", "ani": 76.3894, "matched_fragments": 50, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Leeuwenhoekiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013403985.1", "gtdb_species": "s__Winogradskyella ludwigii", "ani": 76.3668, "matched_fragments": 78, "total_fragments": 543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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