{ "type": "genome", "identifier": "GCA_003486025.1", "organism": "Micrococcaceae bacterium", "title": "Micrococcaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003486025.1", "bioproject": "PRJNA417962", "biosample": "SAMN08018425", "wgs_master": "DNHA00000000.1", "refseq_category": "na", "taxid": "1904863", "species_taxid": "1904863", "organism_name": "Micrococcaceae bacterium", "infraspecific_name": "", "isolate": "UBA8606", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/06", "asm_name": "ASM348602v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/486/025/GCA_003486025.1_ASM348602v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-06", "dateModified": "2018-09-06", "datePublished": "2018-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Micrococcaceae bacterium" ], "sample_taxid": [ "1904863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.795 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.93, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2773829", "Number of Sequences": "370", "Longest Sequences (bp)": "59398", "N50 (bp)": "9824", "Gap Ratio (%)": "0.496966", "GCcontent (%)": "57.5", "Number of CDSs": "2469", "Average Protein Length": "277.5", "Coding Ratio (%)": "74.1", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Glutamicibacter ardleyensis", "strain": "strain=CGMCC 1.3685", "accession": "GCA_014644555.1", "taxid": 225894, "species_taxid": 225894, "relation_to_type": "type", "validated": true, "ani": 92.201, "matched_fragments": 648, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter arilaitensis", "strain": "strain=Re117", "accession": "GCA_000197735.1", "taxid": 256701, "species_taxid": 256701, "relation_to_type": "type", "validated": true, "ani": 80.3464, "matched_fragments": 321, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter nicotianae", "strain": "strain=NBRC 14234", "accession": "GCA_006539525.1", "taxid": 37929, "species_taxid": 37929, "relation_to_type": "type", "validated": true, "ani": 79.9148, "matched_fragments": 326, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=NBRC 103060", "accession": "GCA_001552115.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 79.8972, "matched_fragments": 321, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=DSM 12798", "accession": "GCA_002797775.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 79.8368, "matched_fragments": 324, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mishrai", "strain": "strain=S5-52", "accession": "GCA_012221945.1", "taxid": 1775880, "species_taxid": 1775880, "relation_to_type": "type", "validated": true, "ani": 79.6919, "matched_fragments": 296, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter halophytocola", "strain": "strain=KLBMP 5180", "accession": "GCA_001302565.1", "taxid": 1933880, "species_taxid": 1933880, "relation_to_type": "type", "validated": true, "ani": 79.6225, "matched_fragments": 289, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter protophormiae", "strain": "strain=JCM 1973", "accession": "GCA_014647495.1", "taxid": 37930, "species_taxid": 37930, "relation_to_type": "type", "validated": true, "ani": 79.5022, "matched_fragments": 302, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter protophormiae", "strain": "strain=DSM 20168", "accession": "GCA_017876615.1", "taxid": 37930, "species_taxid": 37930, "relation_to_type": "type", "validated": true, "ani": 79.4111, "matched_fragments": 303, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2299, "matched_fragments": 65, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 76.4589, "matched_fragments": 74, "total_fragments": 736, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.93, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003486025.1", "gtdb_species": "s__Glutamicibacter 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91.038, "matched_fragments": 628, "total_fragments": 736, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002975405.1", "gtdb_species": "s__Glutamicibacter sp002975405", "ani": 82.1373, "matched_fragments": 476, "total_fragments": 736, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002979865.1", "gtdb_species": "s__Glutamicibacter sp002979865", "ani": 79.8238, 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"Bacteria", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Micrococcaceae", "Glutamicibacter", "Glutamicibacter", "sp003486025" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }