{ "type": "genome", "identifier": "GCA_003501035.1", "organism": "Methyloceanibacter sp.", "title": "Methyloceanibacter sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003501035.1", "bioproject": "PRJNA417962", "biosample": "SAMN08018668", "wgs_master": "DNQE00000000.1", "refseq_category": "na", "taxid": "1965321", "species_taxid": "1965321", "organism_name": "Methyloceanibacter sp.", "infraspecific_name": "", "isolate": "UBA10352", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/07", "asm_name": "ASM350103v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/501/035/GCA_003501035.1_ASM350103v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-07", "dateModified": "2018-09-07", "datePublished": "2018-09-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Methyloceanibacter sp." ], "sample_taxid": [ "1965321" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.521 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1858916", "Number of Sequences": "268", "Longest Sequences (bp)": "29752", "N50 (bp)": "9103", "Gap Ratio (%)": "1.914019", "GCcontent (%)": "62.5", "Number of CDSs": "1575", "Average Protein Length": "278.2", "Coding Ratio (%)": "70.7", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloceanibacter methanicus", "strain": "strain=R-67174", "accession": "GCA_001723285.1", "taxid": 1774968, "species_taxid": 1774968, "relation_to_type": "type", "validated": true, "ani": 86.7323, "matched_fragments": 450, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter stevinii", "strain": "strain=R-67176", "accession": "GCA_001723355.1", "taxid": 1774970, "species_taxid": 1774970, "relation_to_type": "type", "validated": true, "ani": 82.2726, "matched_fragments": 435, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter caenitepidi", "strain": "strain=Gela4", "accession": "GCA_000828475.1", "taxid": 1384459, "species_taxid": 1384459, "relation_to_type": "type", "validated": true, "ani": 81.8265, "matched_fragments": 420, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter marginalis", "strain": "strain=R-67177", "accession": "GCA_001723295.1", "taxid": 1774971, "species_taxid": 1774971, "relation_to_type": "type", "validated": true, "ani": 78.7435, "matched_fragments": 216, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloceanibacter superfactus", "strain": "strain=R-67175", "accession": "GCA_001723305.1", "taxid": 1774969, "species_taxid": 1774969, "relation_to_type": "type", "validated": true, "ani": 78.2535, "matched_fragments": 274, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloligella halotolerans", "strain": "strain=VKM B-2706", "accession": "GCA_001708935.1", "taxid": 1177755, "species_taxid": 1177755, "relation_to_type": "type", "validated": true, "ani": 77.1831, "matched_fragments": 134, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum indicum", "strain": "strain=DSM 25305", "accession": "GCA_011762095.1", "taxid": 562969, "species_taxid": 562969, "relation_to_type": "type", "validated": true, "ani": 76.7392, "matched_fragments": 74, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.4813, "matched_fragments": 61, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 76.4481, "matched_fragments": 71, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.3926, "matched_fragments": 62, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 76.2702, "matched_fragments": 71, "total_fragments": 493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 76.2033, 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