{ "type": "genome", "identifier": "GCA_003521045.1", "organism": "Pantoea sp.", "title": "Pantoea sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003521045.1", "bioproject": "PRJNA417962", "biosample": "SAMN08019626", "wgs_master": "DOTQ00000000.1", "refseq_category": "na", "taxid": "69393", "species_taxid": "69393", "organism_name": "Pantoea sp.", "infraspecific_name": "", "isolate": "UBA11287", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/10", "asm_name": "ASM352104v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/521/045/GCA_003521045.1_ASM352104v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-10", "dateModified": "2018-09-10", "datePublished": "2018-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pantoea sp." ], "sample_taxid": [ "69393" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.138 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.59, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4009543", "Number of Sequences": "45", "Longest Sequences (bp)": "303845", "N50 (bp)": "151315", "Gap Ratio (%)": "0.026636", "GCcontent (%)": "54.1", "Number of CDSs": "3655", "Average Protein Length": "321.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pantoea endophytica", "strain": "strain=596", "accession": "GCA_002858935.1", "taxid": 92488, "species_taxid": 92488, "relation_to_type": "type", "validated": true, "ani": 88.3529, "matched_fragments": 1110, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea rodasii", "strain": "strain=LMG 26273", "accession": "GCA_002095465.1", "taxid": 1076549, "species_taxid": 1076549, "relation_to_type": "type", "validated": true, "ani": 84.6353, "matched_fragments": 995, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea rodasii", "strain": "strain=DSM 26611", "accession": "GCA_002811195.1", "taxid": 1076549, "species_taxid": 1076549, "relation_to_type": "type", "validated": true, "ani": 84.5219, "matched_fragments": 1026, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea dispersa", "strain": "strain=CCUG 25232T", "accession": "GCA_008692915.1", "taxid": 59814, "species_taxid": 59814, "relation_to_type": "type", "validated": true, "ani": 84.1877, "matched_fragments": 935, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea dispersa", "strain": "strain=DSM 30073", "accession": "GCA_014155765.1", "taxid": 59814, "species_taxid": 59814, "relation_to_type": "type", "validated": true, "ani": 84.1268, "matched_fragments": 976, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea rwandensis", "strain": "strain=LMG 26275", "accession": "GCA_002095475.1", "taxid": 1076550, "species_taxid": 1076550, "relation_to_type": "type", "validated": true, "ani": 83.7258, "matched_fragments": 948, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea wallisii", "strain": "strain=LMG 26277", "accession": "GCA_002095485.1", "taxid": 1076551, "species_taxid": 1076551, "relation_to_type": "type", "validated": true, "ani": 83.4953, "matched_fragments": 892, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea cypripedii", "strain": "strain=LMG 2657", "accession": "GCA_002095535.1", "taxid": 55209, "species_taxid": 55209, "relation_to_type": "type", "validated": true, "ani": 82.9868, "matched_fragments": 934, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea eucrina", "strain": "strain=LMG 5346", "accession": "GCA_002095385.1", "taxid": 472693, "species_taxid": 472693, "relation_to_type": "type", "validated": true, "ani": 81.589, "matched_fragments": 708, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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