{
    "type": "genome",
    "identifier": "GCA_003521065.1",
    "organism": "Alcaligenes faecalis",
    "title": "Alcaligenes faecalis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_003521065.1",
        "bioproject": "PRJNA417962",
        "biosample": "SAMN08019624",
        "wgs_master": "DOTO00000000.1",
        "refseq_category": "na",
        "taxid": "511",
        "species_taxid": "511",
        "organism_name": "Alcaligenes faecalis",
        "infraspecific_name": "",
        "isolate": "UBA11281",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/09/10",
        "asm_name": "ASM352106v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/521/065/GCA_003521065.1_ASM352106v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-09-10",
    "dateModified": "2018-09-10",
    "datePublished": "2018-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alcaligenes faecalis"
        ],
        "sample_taxid": [
            "511"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.116 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3924687",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "836197",
        "N50 (bp)": "638946",
        "Gap Ratio (%)": "0.008689",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "3582",
        "Average Protein Length": "324.0",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alcaligenes pakistanensis",
                "strain": "strain=KCTC 42083",
                "accession": "GCA_014652815.1",
                "taxid": 1482717,
                "species_taxid": 1482717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0751,
                "matched_fragments": 1254,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
                "strain": "strain=NBRC 13111",
                "accession": "GCA_001748345.1",
                "taxid": 32001,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9171,
                "matched_fragments": 1094,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis",
                "strain": "strain=ATCC 8750",
                "accession": "GCA_001298815.1",
                "taxid": 511,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8931,
                "matched_fragments": 1094,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
                "strain": "strain=NBRC 13111",
                "accession": "GCA_000739855.1",
                "taxid": 32001,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8843,
                "matched_fragments": 1091,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis",
                "strain": "strain=DSM 30030",
                "accession": "GCA_002443155.1",
                "taxid": 511,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8129,
                "matched_fragments": 1120,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes ammonioxydans",
                "strain": "strain=HO-1",
                "accession": "GCA_019343455.1",
                "taxid": 2582914,
                "species_taxid": 2582914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.415,
                "matched_fragments": 973,
                "total_fragments": 1302,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014652815.1",
                "gtdb_species": "s__Alcaligenes pakistanensis",
                "ani": 99.0751,
                "matched_fragments": 1254,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.08",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017377875.1",
                "gtdb_species": "s__Alcaligenes sp017377875",
                "ani": 87.9061,
                "matched_fragments": 1167,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009497775.1",
                "gtdb_species": "s__Alcaligenes faecalis_D",
                "ani": 87.2354,
                "matched_fragments": 1135,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002443155.1",
                "gtdb_species": "s__Alcaligenes faecalis",
                "ani": 86.8177,
                "matched_fragments": 1119,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_005311025.1",
                "gtdb_species": "s__Alcaligenes phenolicus",
                "ani": 86.7165,
                "matched_fragments": 1099,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "96.15",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_003076515.1",
                "gtdb_species": "s__Alcaligenes aquatilis",
                "ani": 85.9089,
                "matched_fragments": 1043,
                "total_fragments": 1302,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": -0.125,
        "doubling_h": null,
        "growth_tmp": 32.0,
        "optimum_tmp": 30.5,
        "optimum_ph": null,
        "genome_size": 4102893.75,
        "gc_content": 56.732,
        "coding_genes": 3698.667,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 57.4,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Alcaligenes",
        "s__Alcaligenes pakistanensis"
    ],
    "_genome_taxon": [
        "Alcaligenes",
        "faecalis",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Alcaligenes",
        "s__Alcaligenes pakistanensis",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Alcaligenes",
        "Alcaligenes",
        "pakistanensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}