{
    "type": "genome",
    "identifier": "GCA_003521085.1",
    "organism": "Bacillus sp. (in: firmicutes)",
    "title": "Bacillus sp. (in: firmicutes)",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_003521085.1",
        "bioproject": "PRJNA417962",
        "biosample": "SAMN08019625",
        "wgs_master": "DOTP00000000.1",
        "refseq_category": "na",
        "taxid": "1409",
        "species_taxid": "1409",
        "organism_name": "Bacillus sp. (in: firmicutes)",
        "infraspecific_name": "",
        "isolate": "UBA11286",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/09/10",
        "asm_name": "ASM352108v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/521/085/GCA_003521085.1_ASM352108v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-09-10",
    "dateModified": "2018-09-10",
    "datePublished": "2018-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus sp. (in: firmicutes)"
        ],
        "sample_taxid": [
            "1409"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.184 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4147949",
        "Number of Sequences": "52",
        "Longest Sequences (bp)": "762433",
        "N50 (bp)": "119216",
        "Gap Ratio (%)": "0.034258",
        "GCcontent (%)": "41.4",
        "Number of CDSs": "4012",
        "Average Protein Length": "286.8",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Siminovitchia fordii",
                "strain": "strain=DSM 16014",
                "accession": "GCA_000374565.1",
                "taxid": 254759,
                "species_taxid": 254759,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9958,
                "matched_fragments": 1355,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Siminovitchia fortis",
                "strain": "strain=DSM 16012",
                "accession": "GCA_003605365.2",
                "taxid": 254758,
                "species_taxid": 254758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4991,
                "matched_fragments": 850,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia acidinfaciens",
                "strain": "strain=3-2-2",
                "accession": "GCA_003605385.2",
                "taxid": 2321395,
                "species_taxid": 2321395,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7739,
                "matched_fragments": 746,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia thermophila",
                "strain": "strain=DSM 105453",
                "accession": "GCA_016909185.1",
                "taxid": 1245522,
                "species_taxid": 1245522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7428,
                "matched_fragments": 242,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia panacisoli",
                "strain": "strain=KACC 17503",
                "accession": "GCA_024626525.1",
                "taxid": 1255251,
                "species_taxid": 1255251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9651,
                "matched_fragments": 85,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citri",
                "strain": "strain=FJAT-49780",
                "accession": "GCA_018343625.1",
                "taxid": 2833580,
                "species_taxid": 2833580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5694,
                "matched_fragments": 104,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3236,
                "matched_fragments": 56,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citrisecundus",
                "strain": "strain=FJAT-49732",
                "accession": "GCA_018343695.1",
                "taxid": 2833583,
                "species_taxid": 2833583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2124,
                "matched_fragments": 106,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000374565.1",
                "gtdb_species": "s__Siminovitchia fordii",
                "ani": 99.9958,
                "matched_fragments": 1355,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003605365.2",
                "gtdb_species": "s__Siminovitchia fortis",
                "ani": 84.4991,
                "matched_fragments": 850,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_003605405.2",
                "gtdb_species": "s__Siminovitchia terrae",
                "ani": 83.3042,
                "matched_fragments": 946,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014836955.1",
                "gtdb_species": "s__Siminovitchia sp014836955",
                "ani": 82.127,
                "matched_fragments": 840,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009928435.1",
                "gtdb_species": "s__Siminovitchia sp009928435",
                "ani": 81.8904,
                "matched_fragments": 720,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003605385.1",
                "gtdb_species": "s__Siminovitchia acidinfaciens",
                "ani": 80.7658,
                "matched_fragments": 745,
                "total_fragments": 1361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "96.47",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.176,
        "cell_length": 0.387,
        "doubling_h": -0.134,
        "growth_tmp": 31.412,
        "optimum_tmp": 33.64,
        "optimum_ph": 7.746,
        "genome_size": 4544138.117,
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        "coding_genes": 4334.002,
        "rRNA16S_genes": 9.859,
        "tRNA_genes": 88.223,
        "gram_stain": 0.993,
        "sporulation": 0.975,
        "motility": 0.841,
        "range_salinity": 0.6,
        "facultative_respiration": 0.16,
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        "aerobic_respiration": 0.827,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.053,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Bacillales_B",
        "f__Bacillaceae_C",
        "g__Siminovitchia",
        "s__Siminovitchia fordii"
    ],
    "_genome_taxon": [
        "Bacillus",
        "sp.",
        "(in:",
        "firmicutes)",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Bacillales_B",
        "f__Bacillaceae_C",
        "g__Siminovitchia",
        "s__Siminovitchia fordii",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Bacillales",
        "B",
        "Bacillaceae",
        "C",
        "Siminovitchia",
        "Siminovitchia",
        "fordii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}