{ "type": "genome", "identifier": "GCA_003521145.1", "organism": "Streptococcus sp.", "title": "Streptococcus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003521145.1", "bioproject": "PRJNA417962", "biosample": "SAMN08019621", "wgs_master": "DOTL00000000.1", "refseq_category": "na", "taxid": "1306", "species_taxid": "1306", "organism_name": "Streptococcus sp.", "infraspecific_name": "", "isolate": "UBA11282", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/10", "asm_name": "ASM352114v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/521/145/GCA_003521145.1_ASM352114v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-10", "dateModified": "2018-09-10", "datePublished": "2018-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus sp." ], "sample_taxid": [ "1306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.479 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1677584", "Number of Sequences": "90", "Longest Sequences (bp)": "77662", "N50 (bp)": "24241", "Gap Ratio (%)": "0.025215", "GCcontent (%)": "39.6", "Number of CDSs": "1796", "Average Protein Length": "265.3", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus salivarius", "strain": "strain=NCTC 8618", "accession": "GCA_000785515.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 93.677, "matched_fragments": 433, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=NCTC8618", "accession": "GCA_900636435.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 93.6678, "matched_fragments": 433, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=ATCC 7073", "accession": "GCA_900143035.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 93.6422, "matched_fragments": 438, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 93.5572, "matched_fragments": 438, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vestibularis", "strain": "strain=ATCC 49124", "accession": "GCA_000188295.1", "taxid": 1343, "species_taxid": 1343, "relation_to_type": "type", "validated": true, "ani": 91.1978, "matched_fragments": 429, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 90.2222, "matched_fragments": 421, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7412, "matched_fragments": 68, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 78.6802, "matched_fragments": 90, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.5817, "matched_fragments": 94, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 77.8437, "matched_fragments": 59, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 77.3756, "matched_fragments": 58, "total_fragments": 514, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003521145.1", "gtdb_species": "s__Streptococcus sp003521145", "ani": 100.0, "matched_fragments": 512, 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"sp003521145" ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }