{ "type": "genome", "identifier": "GCA_003521985.1", "organism": "Alteromonas macleodii", "title": "Alteromonas macleodii", "description": "derived from metagenome; fragmented assembly; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003521985.1", "bioproject": "PRJNA417962", "biosample": "SAMN08019780", "wgs_master": "DPGS00000000.1", "refseq_category": "na", "taxid": "28108", "species_taxid": "28108", "organism_name": "Alteromonas macleodii", "infraspecific_name": "", "isolate": "UBA8667", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/10", "asm_name": "ASM352198v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/521/985/GCA_003521985.1_ASM352198v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-10", "dateModified": "2018-09-10", "datePublished": "2018-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas macleodii" ], "sample_taxid": [ "28108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.27, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2688224", "Number of Sequences": "525", "Longest Sequences (bp)": "31449", "N50 (bp)": "5535", "Gap Ratio (%)": "3.691322", "GCcontent (%)": "44.7", "Number of CDSs": "1823", "Average Protein Length": "275.8", "Coding Ratio (%)": "56.1", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 98.1931, "matched_fragments": 581, "total_fragments": 644, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 89.644, "matched_fragments": 542, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 87.7906, "matched_fragments": 487, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas mediterranea", "strain": "strain=DE", "accession": "GCA_000020585.3", "taxid": 314275, "species_taxid": 314275, "relation_to_type": "type", "validated": true, "ani": 84.1751, "matched_fragments": 463, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 83.5193, "matched_fragments": 438, "total_fragments": 644, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.27, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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