{ "type": "genome", "identifier": "GCA_003536155.1", "organism": "Chryseobacterium sp.", "title": "Chryseobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003536155.1", "bioproject": "PRJNA417962", "biosample": "SAMN08020267", "wgs_master": "DPZO00000000.1", "refseq_category": "na", "taxid": "1871047", "species_taxid": "1871047", "organism_name": "Chryseobacterium sp.", "infraspecific_name": "", "isolate": "UBA8538", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/10", "asm_name": "ASM353615v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/536/155/GCA_003536155.1_ASM353615v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-10", "dateModified": "2018-09-10", "datePublished": "2018-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium sp." ], "sample_taxid": [ "1871047" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.567 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.84, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2111515", "Number of Sequences": "227", "Longest Sequences (bp)": "35858", "N50 (bp)": "12315", "Gap Ratio (%)": "5.008158", "GCcontent (%)": "36.9", "Number of CDSs": "1607", "Average Protein Length": "285.7", "Coding Ratio (%)": "65.2", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium koreense", "strain": "strain=DSM 25209", "accession": "GCA_014201785.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 79.1363, "matched_fragments": 305, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium koreense", "strain": "strain=CCUG 49689", "accession": "GCA_001045435.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 79.0706, "matched_fragments": 305, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella chaponensis", "strain": "strain=DSM 23145", "accession": "GCA_900156725.1", "taxid": 713588, 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"total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 77.8779, "matched_fragments": 240, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 77.6861, "matched_fragments": 176, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 77.6001, "matched_fragments": 171, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 77.4883, "matched_fragments": 175, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 77.3324, "matched_fragments": 150, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lacus", "strain": "strain=YLOS41", "accession": "GCA_003984675.1", "taxid": 2058346, "species_taxid": 2058346, "relation_to_type": "type", "validated": true, "ani": 77.3156, "matched_fragments": 120, "total_fragments": 589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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