{ "type": "genome", "identifier": "GCA_003539685.1", "organism": "Lactobacillus acetotolerans", "title": "Lactobacillus acetotolerans", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003539685.1", "bioproject": "PRJNA417962", "biosample": "SAMN08019982", "wgs_master": "DPOO00000000.1", "refseq_category": "na", "taxid": "1600", "species_taxid": "1600", "organism_name": "Lactobacillus acetotolerans", "infraspecific_name": "", "isolate": "UBA10580", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/10", "asm_name": "ASM353968v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/539/685/GCA_003539685.1_ASM353968v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-10", "dateModified": "2018-09-10", "datePublished": "2018-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus acetotolerans" ], "sample_taxid": [ "1600" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.337 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.31, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1227780", "Number of Sequences": "144", "Longest Sequences (bp)": "75017", "N50 (bp)": "9868", "Gap Ratio (%)": "4.644806", "GCcontent (%)": "36.5", "Number of CDSs": "1022", "Average Protein Length": "271.2", "Coding Ratio (%)": "67.7", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus acetotolerans", "strain": "strain=JCM 3825", "accession": "GCA_014648715.1", "taxid": 1600, "species_taxid": 1600, "relation_to_type": "type", "validated": true, "ani": 98.8466, "matched_fragments": 298, "total_fragments": 341, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus acetotolerans", "strain": "strain=DSM 20749", "accession": "GCA_001436775.1", "taxid": 1600, "species_taxid": 1600, "relation_to_type": "type", "validated": true, "ani": 98.8198, "matched_fragments": 294, "total_fragments": 341, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus hamsteri", "strain": "strain=DSM 5661", "accession": "GCA_001434515.1", "taxid": 96565, "species_taxid": 96565, "relation_to_type": "type", "validated": true, "ani": 79.1747, "matched_fragments": 125, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus ultunensis", "strain": "strain=DSM 16047", "accession": "GCA_001436305.1", "taxid": 227945, "species_taxid": 227945, "relation_to_type": "type", "validated": true, "ani": 79.1735, "matched_fragments": 128, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus ultunensis", "strain": "strain=DSM 16047", "accession": "GCA_000159415.1", "taxid": 227945, "species_taxid": 227945, "relation_to_type": "type", "validated": true, "ani": 79.1571, "matched_fragments": 131, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum", "strain": "strain=DSM 10550", "accession": "GCA_001434195.1", "taxid": 190906, "species_taxid": 267818, "relation_to_type": "type", "validated": true, "ani": 79.1384, "matched_fragments": 133, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus kefiranofaciens", "strain": "strain=ATCC 43761", "accession": "GCA_900103655.1", "taxid": 267818, "species_taxid": 267818, "relation_to_type": "type", "validated": true, "ani": 79.1202, "matched_fragments": 132, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus helveticus", "strain": "strain=JCM 1120", "accession": "GCA_015698225.1", "taxid": 1587, "species_taxid": 1587, "relation_to_type": "type", "validated": true, "ani": 79.0185, "matched_fragments": 122, "total_fragments": 341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus intestinalis", "strain": "strain=DSM 6629", "accession": "GCA_024397795.1", "taxid": 151781, 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