{ "type": "genome", "identifier": "GCA_003577005.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_003577005.1", "bioproject": "PRJNA450161", "biosample": "SAMN08931185", "wgs_master": "QEUW00000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "CFX5", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/19", "asm_name": "ASM357700v1", "submitter": "Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/577/005/GCA_003577005.1_ASM357700v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-19", "dateModified": "2018-09-19", "datePublished": "2018-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "2.673 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 13.89, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "9366412", "Number of Sequences": "847", "Longest Sequences (bp)": "90053", "N50 (bp)": "18517", "Gap Ratio (%)": "0.001964", "GCcontent (%)": "59.4", "Number of CDSs": "7310", "Average Protein Length": "328.6", "Coding Ratio (%)": "76.9", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litorilinea aerophila", "strain": "strain=ATCC BAA-2444", "accession": "GCA_006569185.2", "taxid": 1204385, "species_taxid": 1204385, "relation_to_type": "type", "validated": true, "ani": 76.1781, "matched_fragments": 225, "total_fragments": 2677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chloroflexus islandicus", "strain": "strain=isl-2", "accession": "GCA_001650695.1", "taxid": 1707952, "species_taxid": 1707952, "relation_to_type": "type", "validated": true, "ani": 74.8339, "matched_fragments": 53, "total_fragments": 2677, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 74.7631, "matched_fragments": 74, "total_fragments": 2677, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 13.89, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003577005.1", "gtdb_species": "s__CFX5 sp003577005", "ani": 100.0, "matched_fragments": 2641, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__CFX5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016861025.1", "gtdb_species": "s__Caldilinea sp016861025", "ani": 76.4433, "matched_fragments": 160, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006569185.1", "gtdb_species": "s__Litorilinea aerophila", "ani": 76.1816, "matched_fragments": 226, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Litorilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012032975.1", "gtdb_species": "s__JAAUPU01 sp012032975", "ani": 76.0542, "matched_fragments": 109, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAAUPU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710365.1", "gtdb_species": "s__Caldilinea sp016710365", "ani": 76.0261, "matched_fragments": 191, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000281175.1", "gtdb_species": "s__Caldilinea aerophila", "ani": 75.9778, "matched_fragments": 127, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003451595.1", "gtdb_species": "s__Caldilinea sp003451595", "ani": 75.9554, "matched_fragments": 137, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016124945.1", "gtdb_species": "s__RI-153 sp016124945", "ani": 75.8847, "matched_fragments": 178, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__RI-153", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018003515.1", "gtdb_species": "s__JAGNDO01 sp018003515", "ani": 75.8032, "matched_fragments": 115, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAGNDO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903879975.1", "gtdb_species": "s__Caldilinea sp903879975", "ani": 75.688, "matched_fragments": 114, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002391565.1", "gtdb_species": "s__Caldilinea sp002391565", "ani": 75.6826, "matched_fragments": 155, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016713335.1", "gtdb_species": "s__JADJPH01 sp016713335", "ani": 75.5472, "matched_fragments": 81, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JADJPH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011523365.1", "gtdb_species": "s__Bin5 sp011523365", "ani": 75.3107, "matched_fragments": 80, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002842085.1", "gtdb_species": "s__CG2-30-64-16 sp002842085", "ani": 75.0313, "matched_fragments": 50, "total_fragments": 2677, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__CG2-30-64-16;f__CG2-30-64-16;g__CG2-30-64-16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__CFX5", "s__CFX5 sp003577005" ], "_genome_taxon": [ "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__CFX5", "s__CFX5 sp003577005", "Bacteria", "Chloroflexota", "Anaerolineae", "Caldilineales", "Caldilineaceae", "CFX5", "CFX5", "sp003577005" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }