{ "tc_result": [ { "organism_name": "Lachnoanaerobaculum saburreum", "strain": "strain=DSM 3986", "accession": "GCA_000185385.1", "taxid": 467210, "species_taxid": 467210, "relation_to_type": "type", "validated": true, "ani": 94.5044, "matched_fragments": 760, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoanaerobaculum gingivalis", "strain": "strain=KCOM 2030", "accession": "GCA_003862475.1", "taxid": 2490855, "species_taxid": 2490855, "relation_to_type": "type", "validated": true, "ani": 87.9635, "matched_fragments": 712, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoanaerobaculum orale", "strain": "strain=DSM 24553", "accession": "GCA_003862485.1", "taxid": 979627, "species_taxid": 979627, "relation_to_type": "type", "validated": true, "ani": 85.9771, "matched_fragments": 675, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoanaerobaculum umeaense", "strain": "strain=DSM 23576 = CCUG 58757", "accession": "GCA_003589745.1", "taxid": 617123, "species_taxid": 617123, "relation_to_type": "type", "validated": true, "ani": 83.8393, "matched_fragments": 656, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoanaerobaculum umeaense", "strain": "strain=DSM 23576", "accession": "GCA_003254255.1", "taxid": 617123, "species_taxid": 617123, "relation_to_type": "type", "validated": true, "ani": 83.8024, "matched_fragments": 623, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catonella morbi", "strain": "strain=ATCC 51271", "accession": "GCA_000160035.2", "taxid": 43997, "species_taxid": 43997, "relation_to_type": "type", "validated": true, "ani": 81.5548, "matched_fragments": 153, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Johnsonella ignava", "strain": "strain=ATCC 51276", "accession": "GCA_000235445.1", "taxid": 43995, "species_taxid": 43995, "relation_to_type": "type", "validated": true, "ani": 79.0654, "matched_fragments": 168, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptoanaerobacter stomatis", "strain": "strain=ACC19a", "accession": "GCA_000238115.1", "taxid": 796937, "species_taxid": 796937, "relation_to_type": "type", "validated": true, "ani": 79.0208, "matched_fragments": 83, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catonella massiliensis", "strain": "strain=Marseille-Q4567", "accession": "GCA_016651435.1", "taxid": 2799636, "species_taxid": 2799636, "relation_to_type": "type", "validated": true, "ani": 78.6724, "matched_fragments": 93, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=DSM 1288", "accession": "GCA_000439105.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7816, "matched_fragments": 52, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=ATCC 14880", "accession": "GCA_000373865.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7384, "matched_fragments": 50, "total_fragments": 2356, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 245.36, "strain_heterogeneity": 25.11 }, "gtdb_result": [ { "accession": "GCA_900766185.1", "gtdb_species": "s__Johnsonella sp900766185", "ani": 95.8574, "matched_fragments": 491, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Johnsonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "inconclusive" }, { "accession": "GCA_000209465.1", "gtdb_species": "s__Lachnoanaerobaculum sp000209465", "ani": 95.2343, "matched_fragments": 796, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "inconclusive" }, { "accession": "GCF_000185385.1", "gtdb_species": "s__Lachnoanaerobaculum saburreum", "ani": 94.581, "matched_fragments": 757, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900167215.1", "gtdb_species": "s__Peptoanaerobacter yurii", "ani": 93.4739, "matched_fragments": 185, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905373785.1", "gtdb_species": "s__Johnsonella sp905373785", "ani": 92.9421, "matched_fragments": 387, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Johnsonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000296385.1", "gtdb_species": "s__Lachnoanaerobaculum sp000296385", "ani": 88.844, "matched_fragments": 709, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003862475.1", "gtdb_species": "s__Lachnoanaerobaculum gingivalis", "ani": 87.9402, "matched_fragments": 713, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000287675.1", "gtdb_species": "s__Lachnoanaerobaculum sp000287675", "ani": 87.671, "matched_fragments": 674, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.71", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000146855.1", "gtdb_species": "s__Peptoanaerobacter margaretiae", "ani": 86.8893, "matched_fragments": 178, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003862485.1", "gtdb_species": "s__Lachnoanaerobaculum orale", "ani": 85.96, "matched_fragments": 676, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.98", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003589745.1", "gtdb_species": "s__Lachnoanaerobaculum umeaense", "ani": 83.8333, "matched_fragments": 655, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000160035.2", "gtdb_species": "s__Catonella morbi", "ani": 81.5237, "matched_fragments": 154, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000235445.1", "gtdb_species": "s__Johnsonella ignava", "ani": 79.0654, "matched_fragments": 168, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Johnsonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000238115.1", "gtdb_species": "s__Peptoanaerobacter stomatis", "ani": 78.9659, "matched_fragments": 84, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Filifactoraceae;g__Peptoanaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.77", "min_intra_species_ani": "95.04", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016651435.1", "gtdb_species": "s__Catonella massiliensis", "ani": 78.6521, "matched_fragments": 94, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Catonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.56", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000439105.1", "gtdb_species": "s__Terrisporobacter glycolicus", "ani": 74.7816, "matched_fragments": 52, "total_fragments": 2356, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Terrisporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }