{ "type": "genome", "identifier": "GCA_004017145.1", "organism": "Mesorhizobium sp.", "title": "Mesorhizobium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Cook Lab - University of California at Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004017145.1", "bioproject": "PRJNA453501", "biosample": "SAMN10686846", "wgs_master": "SAKK00000000.1", "refseq_category": "na", "taxid": "1871066", "species_taxid": "1871066", "organism_name": "Mesorhizobium sp.", "infraspecific_name": "", "isolate": "N.Ca.ET.024.03.1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/14", "asm_name": "ASM401714v1", "submitter": "Cook Lab - University of California at Davis", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/017/145/GCA_004017145.1_ASM401714v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-14", "dateModified": "2019-01-14", "datePublished": "2019-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium sp." ], "sample_taxid": [ "1871066" ], "sample_host_organism": [ "Cicer arietinum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Ethiopia: Amhara, East Gojjam" ], "sample_host_location_id": [], "data_size": "1.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6438969", "Number of Sequences": "222", "Longest Sequences (bp)": "443972", "N50 (bp)": "73092", "Gap Ratio (%)": "0.070912", "GCcontent (%)": "63.0", "Number of CDSs": "6213", "Average Protein Length": "294.6", "Coding Ratio (%)": "85.3", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", "taxid": 536018, "species_taxid": 536018, "relation_to_type": "type", "validated": true, "ani": 91.2936, "matched_fragments": 1598, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 88.6375, "matched_fragments": 1540, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 88.5378, "matched_fragments": 1646, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 88.5098, "matched_fragments": 1626, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=ATCC 33669", "accession": "GCA_013170785.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 88.454, "matched_fragments": 1600, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 88.3135, "matched_fragments": 1618, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 88.1101, "matched_fragments": 1623, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 87.9366, "matched_fragments": 1458, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 87.4067, "matched_fragments": 1546, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 87.3961, "matched_fragments": 1599, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium loti", "strain": "strain=DSM 2626", "accession": "GCA_003148495.1", "taxid": 381, "species_taxid": 381, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2344, "matched_fragments": 1585, "total_fragments": 2059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium qingshengii", "strain": "strain=CGMCC 1.12097", "accession": "GCA_900103325.1", "taxid": 1165689, "species_taxid": 1165689, 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