{
    "type": "genome",
    "identifier": "GCA_004022005.1",
    "organism": "Mesorhizobium sp.",
    "title": "Mesorhizobium sp.",
    "description": "unverified source organism; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Cook Lab - University of California at Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004022005.1",
        "bioproject": "PRJNA453501",
        "biosample": "SAMN10686763",
        "wgs_master": "SASN00000000.1",
        "refseq_category": "na",
        "taxid": "1871066",
        "species_taxid": "1871066",
        "organism_name": "Mesorhizobium sp.",
        "infraspecific_name": "",
        "isolate": "N.Cr.TU.013.02.1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/01/14",
        "asm_name": "ASM402200v1",
        "submitter": "Cook Lab - University of California at Davis",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/022/005/GCA_004022005.1_ASM402200v1",
        "excluded_from_refseq": "unverified source organism; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-01-14",
    "dateModified": "2019-01-14",
    "datePublished": "2019-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mesorhizobium sp."
        ],
        "sample_taxid": [
            "1871066"
        ],
        "sample_host_organism": [
            "Cicer reticulatum"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Turkey: Mardin, Savur"
        ],
        "sample_host_location_id": [],
        "data_size": "1.931 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6866761",
        "Number of Sequences": "283",
        "Longest Sequences (bp)": "405559",
        "N50 (bp)": "71029",
        "Gap Ratio (%)": "0.033291",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "6541",
        "Average Protein Length": "289.4",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mesorhizobium muleiense",
                "strain": "strain=CGMCC 1.11022",
                "accession": "GCA_900099905.1",
                "taxid": 1004279,
                "species_taxid": 1004279,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.943,
                "matched_fragments": 1871,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mesorhizobium temperatum",
                "strain": "strain=SDW018",
                "accession": "GCA_002284575.1",
                "taxid": 241416,
                "species_taxid": 241416,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8634,
                "matched_fragments": 1716,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium wenxiniae",
                "strain": "strain=WYCCWR 10195",
                "accession": "GCA_002284535.1",
                "taxid": 2014805,
                "species_taxid": 2014805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7536,
                "matched_fragments": 1705,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6572,
                "matched_fragments": 1714,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium metallidurans",
                "strain": "strain=STM 2683",
                "accession": "GCA_000350085.1",
                "taxid": 489722,
                "species_taxid": 489722,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3242,
                "matched_fragments": 1325,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium helmanticense",
                "strain": "strain=CSLC115N",
                "accession": "GCA_003034915.1",
                "taxid": 1776423,
                "species_taxid": 1776423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1164,
                "matched_fragments": 1351,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium sanjuanii",
                "strain": "strain=BSA136",
                "accession": "GCA_002529485.1",
                "taxid": 2037900,
                "species_taxid": 2037900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.039,
                "matched_fragments": 1225,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
                "strain": "strain=3P27G6",
                "accession": "GCA_005503535.1",
                "taxid": 2502215,
                "species_taxid": 2502215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0353,
                "matched_fragments": 1175,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=19-2017",
                "accession": "GCA_018310375.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.124,
                "matched_fragments": 672,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=HC19",
                "accession": "GCA_014595955.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1132,
                "matched_fragments": 674,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
                "strain": "strain=CAU 1489",
                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9296,
                "matched_fragments": 611,
                "total_fragments": 2184,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900099905.1",
                "gtdb_species": "s__Mesorhizobium muleiense",
                "ani": 96.952,
                "matched_fragments": 1870,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.77",
                "min_intra_species_ani": "96.33",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 57,
                "status": "conclusive"
            },
            {
                "accession": "GCA_004020365.1",
                "gtdb_species": "s__Mesorhizobium sp004020365",
                "ani": 94.9144,
                "matched_fragments": 1753,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.10",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_900156895.1",
                "gtdb_species": "s__Mesorhizobium prunaredense",
                "ani": 94.8514,
                "matched_fragments": 1728,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016756595.1",
                "gtdb_species": "s__Mesorhizobium sp004020105",
                "ani": 94.1804,
                "matched_fragments": 1744,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_004020645.1",
                "gtdb_species": "s__Mesorhizobium sp004020645",
                "ani": 92.9656,
                "matched_fragments": 1735,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_004020315.1",
                "gtdb_species": "s__Mesorhizobium sp004020315",
                "ani": 92.9176,
                "matched_fragments": 1678,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "99.08",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002284575.1",
                "gtdb_species": "s__Mesorhizobium temperatum",
                "ani": 92.8468,
                "matched_fragments": 1718,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002284535.1",
                "gtdb_species": "s__Mesorhizobium wenxiniae",
                "ani": 92.755,
                "matched_fragments": 1705,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.50",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 62,
                "status": "-"
            },
            {
                "accession": "GCF_002284565.1",
                "gtdb_species": "s__Mesorhizobium mediterraneum_A",
                "ani": 91.9454,
                "matched_fragments": 1674,
                "total_fragments": 2184,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 20,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.394,
        "cell_length": 0.163,
        "doubling_h": 0.38,
        "growth_tmp": 28.738,
        "optimum_tmp": 28.233,
        "optimum_ph": 7.1,
        "genome_size": 6924855.425,
        "gc_content": 61.795,
        "coding_genes": 6455.004,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.916,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.923,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Mesorhizobium",
        "s__Mesorhizobium muleiense"
    ],
    "_genome_taxon": [
        "Mesorhizobium",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Mesorhizobium",
        "s__Mesorhizobium muleiense",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Rhizobiaceae",
        "Mesorhizobium",
        "Mesorhizobium",
        "muleiense"
    ],
    "_meo": [
        {
            "id": "MEO_0000055",
            "label": "rhizosphere"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}