{
    "type": "genome",
    "identifier": "GCA_004144705.1",
    "organism": "Comamonadaceae bacterium",
    "title": "Comamonadaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of East Anglia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004144705.1",
        "bioproject": "PRJNA272922",
        "biosample": "SAMN10678569",
        "wgs_master": "SEBA00000000.1",
        "refseq_category": "na",
        "taxid": "1871071",
        "species_taxid": "1871071",
        "organism_name": "Comamonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "PMG_263",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/06",
        "asm_name": "ASM414470v1",
        "submitter": "University of East Anglia",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/144/705/GCA_004144705.1_ASM414470v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-06",
    "dateModified": "2019-02-06",
    "datePublished": "2019-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Comamonadaceae bacterium"
        ],
        "sample_taxid": [
            "1871071"
        ],
        "sample_host_organism": [
            "Populus alba"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "0.423 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 27.46,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1518870",
        "Number of Sequences": "170",
        "Longest Sequences (bp)": "81045",
        "N50 (bp)": "18472",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "1260",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "76.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Acidovorax wautersii",
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                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 276,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
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                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
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                "relation_to_type": "type",
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                "ani": 82.8796,
                "matched_fragments": 256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8164,
                "matched_fragments": 270,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax avenae subsp. avenae",
                "strain": "strain=ATCC 19860",
                "accession": "GCA_000176855.2",
                "taxid": 80870,
                "species_taxid": 80867,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.7574,
                "matched_fragments": 268,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax soli",
                "strain": "strain=DSM 25157",
                "accession": "GCA_900107605.1",
                "taxid": 592050,
                "species_taxid": 592050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1824,
                "matched_fragments": 212,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7928,
                "matched_fragments": 253,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax radicis",
                "strain": "strain=N35",
                "accession": "GCA_000204195.2",
                "taxid": 758826,
                "species_taxid": 758826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.623,
                "matched_fragments": 233,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas phosphati",
                "strain": "strain=CGMCC 1.12294",
                "accession": "GCA_014637085.1",
                "taxid": 1211803,
                "species_taxid": 1211803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8205,
                "matched_fragments": 205,
                "total_fragments": 424,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 27.46,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001424265.1",
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                "matched_fragments": 288,
                "total_fragments": 424,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001424425.1",
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                "total_fragments": 424,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
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            {
                "accession": "GCA_002397315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003852545.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
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            {
                "accession": "GCF_013408765.1",
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            },
            {
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            },
            {
                "accession": "GCF_019219095.1",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_018242005.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.247,
        "cell_length": 0.176,
        "doubling_h": 1.035,
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        "coding_genes": 4414.595,
        "rRNA16S_genes": 3.003,
        "tRNA_genes": 56.995,
        "gram_stain": 0.0,
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        "motility": 0.797,
        "range_salinity": 0.2,
        "facultative_respiration": 0.138,
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        "aerobic_respiration": 0.861,
        "mesophilic_range_tmp": 0.96,
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        "bacillus_cell_shape": 0.855,
        "coccus_cell_shape": 0.052,
        "filament_cell_shape": 0.0,
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        "vibrio_cell_shape": 0.052,
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    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paracidovorax",
        "s__"
    ],
    "_genome_taxon": [
        "Comamonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paracidovorax",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Paracidovorax",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000207",
            "label": "woodland"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}