{
    "type": "genome",
    "identifier": "GCA_004145185.1",
    "organism": "Cytophagaceae bacterium",
    "title": "Cytophagaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of East Anglia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_004145185.1",
        "bioproject": "PRJNA272922",
        "biosample": "SAMN10678575",
        "wgs_master": "SEBG00000000.1",
        "refseq_category": "na",
        "taxid": "2026729",
        "species_taxid": "2026729",
        "organism_name": "Cytophagaceae bacterium",
        "infraspecific_name": "",
        "isolate": "PMG_043",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/06",
        "asm_name": "ASM414518v1",
        "submitter": "University of East Anglia",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/145/185/GCA_004145185.1_ASM414518v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-06",
    "dateModified": "2019-02-06",
    "datePublished": "2019-02-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytophagaceae bacterium"
        ],
        "sample_taxid": [
            "2026729"
        ],
        "sample_host_organism": [
            "Populus alba"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Norwich"
        ],
        "sample_host_location_id": [],
        "data_size": "1.685 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 28.02,
        "contamination": 8.71,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5676519",
        "Number of Sequences": "3450",
        "Longest Sequences (bp)": "33883",
        "N50 (bp)": "1572",
        "Gap Ratio (%)": "0.005056",
        "GCcontent (%)": "52.5",
        "Number of CDSs": "3719",
        "Average Protein Length": "165.2",
        "Coding Ratio (%)": "32.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 28.02,
            "contamination": 8.71,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": []
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.232,
        "cell_length": 0.526,
        "doubling_h": null,
        "growth_tmp": 26.902,
        "optimum_tmp": 26.908,
        "optimum_ph": 7.178,
        "genome_size": 6461989.452,
        "gc_content": 45.029,
        "coding_genes": 5174.515,
        "rRNA16S_genes": 2.888,
        "tRNA_genes": 41.35,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.162,
        "range_salinity": 1.0,
        "facultative_respiration": 0.06,
        "anaerobic_respiration": 0.02,
        "aerobic_respiration": 0.92,
        "mesophilic_range_tmp": 0.875,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.125,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__",
        "o__",
        "f__",
        "g__",
        "s__"
    ],
    "_genome_taxon": [
        "Cytophagaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__",
        "o__",
        "f__",
        "g__",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "c",
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        "o",
        "",
        "",
        "f",
        "",
        "",
        "g",
        "",
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        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000207",
            "label": "woodland"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}