{ "type": "genome", "identifier": "GCA_004146005.1", "organism": "Actinomycetales bacterium", "title": "Actinomycetales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004146005.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678489", "wgs_master": "SDYB00000000.1", "refseq_category": "na", "taxid": "1911520", "species_taxid": "1911520", "organism_name": "Actinomycetales bacterium", "infraspecific_name": "", "isolate": "PMG_118", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/06", "asm_name": "ASM414600v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/146/005/GCA_004146005.1_ASM414600v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-06", "dateModified": "2019-02-06", "datePublished": "2019-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetales bacterium" ], "sample_taxid": [ "1911520" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.83, "contamination": 43.76, "strain_heterogeneity": 38.89, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4211945", "Number of Sequences": "2512", "Longest Sequences (bp)": "9824", "N50 (bp)": "1689", "Gap Ratio (%)": "0.002493", "GCcontent (%)": "70.9", "Number of CDSs": "2343", "Average Protein Length": "223.2", "Coding Ratio (%)": "37.3", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromicrobium choanae", "strain": "strain=9H-4", "accession": "GCA_900167475.1", "taxid": 1736691, "species_taxid": 1736691, "relation_to_type": "type", "validated": true, "ani": 80.8338, "matched_fragments": 79, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium endophyticum", "strain": "strain=M2KJ-4", "accession": "GCA_003586285.1", "taxid": 2292704, "species_taxid": 2292704, "relation_to_type": "type", "validated": true, "ani": 80.8162, "matched_fragments": 109, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium erythreum", "strain": "strain=AR18", "accession": "GCA_001509405.1", "taxid": 2041, "species_taxid": 2041, "relation_to_type": "type", "validated": true, "ani": 80.7422, "matched_fragments": 120, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium stalagmiti", "strain": "strain=YC3-14", "accession": "GCA_013283745.1", "taxid": 2738988, "species_taxid": 2738988, "relation_to_type": "type", "validated": true, "ani": 80.5913, "matched_fragments": 104, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium fastidiosum", "strain": "strain=DSM 10552", "accession": "GCA_017876595.1", "taxid": 52699, "species_taxid": 52699, "relation_to_type": "type", "validated": true, "ani": 80.4971, "matched_fragments": 112, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium phoceense", "strain": "strain=Marseille-Q0843", "accession": "GCA_013868155.1", "taxid": 2754045, "species_taxid": 2754045, "relation_to_type": "type", "validated": true, "ani": 80.4342, "matched_fragments": 84, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=DSM 19087", "accession": "GCA_013408555.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 80.2734, "matched_fragments": 96, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=SSW1-57", "accession": "GCA_014672995.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 80.1921, "matched_fragments": 94, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium yanjiei", "strain": "strain=MF47", "accession": "GCA_009649075.1", "taxid": 2662028, "species_taxid": 2662028, "relation_to_type": "type", "validated": true, "ani": 80.0778, "matched_fragments": 99, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium terrae", "strain": "strain=CC-CFT486", "accession": "GCA_008039565.1", "taxid": 2498846, "species_taxid": 2498846, "relation_to_type": "type", "validated": true, "ani": 80.0655, "matched_fragments": 100, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium chenweiae", "strain": "strain=592", "accession": "GCA_003065605.1", "taxid": 2079793, "species_taxid": 2079793, "relation_to_type": "type", "validated": true, "ani": 80.013, "matched_fragments": 102, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium ginsengisoli", "strain": "strain=JCM 14732", "accession": "GCA_004134905.2", "taxid": 363867, "species_taxid": 363867, "relation_to_type": "type", "validated": true, "ani": 79.6284, "matched_fragments": 93, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium marinum", "strain": "strain=DSM 15272", "accession": "GCA_000160775.2", "taxid": 219314, "species_taxid": 219314, "relation_to_type": "type", "validated": true, "ani": 79.4876, "matched_fragments": 94, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium camelliae", "strain": "strain=YS17T", "accession": "GCA_003850045.1", "taxid": 1538144, "species_taxid": 1538144, "relation_to_type": "type", "validated": true, "ani": 79.3233, "matched_fragments": 66, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium piscarium", "strain": "strain=Co35", "accession": "GCA_007421815.1", "taxid": 2590901, "species_taxid": 2590901, "relation_to_type": "type", "validated": true, "ani": 78.8322, "matched_fragments": 60, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium phragmitis", "strain": "strain=9W16Y-2", "accession": "GCA_003674095.1", "taxid": 2478914, "species_taxid": 2478914, "relation_to_type": "type", "validated": true, "ani": 78.786, "matched_fragments": 70, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 78.4318, "matched_fragments": 66, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 78.3665, "matched_fragments": 72, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 78.2198, "matched_fragments": 75, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 78.1187, "matched_fragments": 70, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides astragali", "strain": "strain=CGMCC 4.7327", "accession": "GCA_024436375.1", "taxid": 1776736, "species_taxid": 1776736, "relation_to_type": "type", "validated": true, "ani": 78.1173, "matched_fragments": 66, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 78.0874, "matched_fragments": 72, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 77.9472, "matched_fragments": 73, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.9296, "matched_fragments": 72, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.9025, "matched_fragments": 71, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 77.8389, "matched_fragments": 63, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.7978, "matched_fragments": 63, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 77.612, "matched_fragments": 62, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caatingaensis", "strain": "strain=CMAA 1322", "accession": "GCA_001187435.1", "taxid": 1678637, "species_taxid": 1678637, "relation_to_type": "type", "validated": true, "ani": 76.7638, "matched_fragments": 55, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces omiyaensis", "strain": "strain=JCM 4806", "accession": "GCA_014650895.1", "taxid": 68247, "species_taxid": 68247, "relation_to_type": "type", "validated": true, "ani": 76.6675, "matched_fragments": 64, "total_fragments": 171, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.83, "contamination": 43.76, "strain_heterogeneity": 38.89 }, "gtdb_result": [ { "accession": "GCF_001426755.1", "gtdb_species": "s__Aeromicrobium sp001426755", "ani": 96.7031, "matched_fragments": 151, "total_fragments": 171, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001423335.1", "gtdb_species": "s__Aeromicrobium sp001423335", "ani": 81.2203, "matched_fragments": 127, "total_fragments": 171, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001509405.1", "gtdb_species": "s__Aeromicrobium erythreum", "ani": 80.8497, 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