{ "type": "genome", "identifier": "GCA_004173255.1", "organism": "Chitinophagaceae bacterium", "title": "Chitinophagaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004173255.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678542", "wgs_master": "SDZZ00000000.1", "refseq_category": "na", "taxid": "1869212", "species_taxid": "1869212", "organism_name": "Chitinophagaceae bacterium", "infraspecific_name": "", "isolate": "PMG_180", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/12", "asm_name": "ASM417325v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/173/255/GCA_004173255.1_ASM417325v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-12", "dateModified": "2019-02-12", "datePublished": "2019-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophagaceae bacterium" ], "sample_taxid": [ "1869212" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "1.467 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 4.63, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5113965", "Number of Sequences": "903", "Longest Sequences (bp)": "33242", "N50 (bp)": "9121", "Gap Ratio (%)": "0.000039", "GCcontent (%)": "49.8", "Number of CDSs": "3477", "Average Protein Length": "339.5", "Coding Ratio (%)": "69.3", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Terrimonas ferruginea", "strain": "strain=DSM 30193", "accession": "GCA_000425585.1", "taxid": 249, "species_taxid": 249, "relation_to_type": "type", "validated": true, "ani": 76.5751, "matched_fragments": 117, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=DSM 18116", "accession": "GCA_004291315.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 76.0389, "matched_fragments": 58, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 76.0055, "matched_fragments": 50, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=Gsoil 221", "accession": "GCA_007970185.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 75.958, "matched_fragments": 61, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 75.8606, "matched_fragments": 55, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella drilacis", "strain": "strain=DSM 25811", "accession": 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75.6047, "matched_fragments": 59, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 4.63, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_004173255.1", "gtdb_species": "s__46-32 sp004173255", "ani": 100.0, "matched_fragments": 1225, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__46-32", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_004173355.1", "gtdb_species": "s__46-32 sp004173355", "ani": 79.2324, "matched_fragments": 586, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__46-32", "ani_circumscription_radius": 95.0, 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