{ "type": "genome", "identifier": "GCA_004173885.1", "organism": "Myxococcaceae bacterium", "title": "Myxococcaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004173885.1", "bioproject": "PRJNA272922", "biosample": "SAMN10678609", "wgs_master": "SECO00000000.1", "refseq_category": "na", "taxid": "2484252", "species_taxid": "2484252", "organism_name": "Myxococcaceae bacterium", "infraspecific_name": "", "isolate": "PMG_239", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/12", "asm_name": "ASM417388v1", "submitter": "University of East Anglia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/173/885/GCA_004173885.1_ASM417388v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-12", "dateModified": "2019-02-12", "datePublished": "2019-02-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcaceae bacterium" ], "sample_taxid": [ "2484252" ], "sample_host_organism": [ "Populus alba" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Norwich" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 18.75, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2875320", "Number of Sequences": "1655", "Longest Sequences (bp)": "9582", "N50 (bp)": "1731", "Gap Ratio (%)": "0.001843", "GCcontent (%)": "69.5", "Number of CDSs": "1350", "Average Protein Length": "226.3", "Coding Ratio (%)": "31.9", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 97.0461, "matched_fragments": 131, "total_fragments": 142, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 82.9682, "matched_fragments": 100, "total_fragments": 142, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 18.75, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003611695.1", "gtdb_species": "s__Corallococcus carmarthensis", "ani": 84.079, "matched_fragments": 111, "total_fragments": 142, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611585.1", "gtdb_species": "s__Corallococcus exercitus", "ani": 84.0455, "matched_fragments": 106, "total_fragments": 142, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003612165.1", "gtdb_species": "s__Corallococcus aberystwythensis", "ani": 83.7333, "matched_fragments": 109, "total_fragments": 142, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000255295.1", "gtdb_species": "s__Corallococcus coralloides", "ani": 83.6639, "matched_fragments": 117, "total_fragments": 142, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.87", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { 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"Myxococcales", "Myxococcaceae", "Corallococcus", "Corallococcus", "soli" ], "_meo": [ { "id": "MEO_0000207", "label": "woodland" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }